Query= MSMg01no463_l08.b1 MSMg01no463_l08.b1 CHROMAT_FILE:
MSMg01no463_l08.b1 PHD_FILE: MSMg01no463_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:14 2005
(243 letters)
>mm_chr2_153164872_153165514
Length = 643
Score = 447 bits (231), Expect = e-130
Identities = 240/243 (98%)
Strand = Plus / Minus
Query: 1 ttctgtgctacaagaaacactggctcaaagcaaaactatgtttctctagggactaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttctgtgctacaagaaacactggctcaaagcaaaactatgtttctctagggactaacaaa 384
Query: 61 taggaggtagtgaggaacacaggagaccttcaggaggagctggtactttatcgcccggct 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 taggaggtagtgaggaacacaggagaccttcaggaggagctgatactttatcgcccggct 324
Query: 121 gtcactactagttctatgtgatatttagtaatatacacctcctttcgcgtgcctgaatga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 323 gtcactactagttctatgtgatatttagtaatatacacctcctctcgcgtgcctgaagga 264
Query: 181 tggctgcttaatctcttcagcagctctgcagggtctgctctacctagacagccacagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggctgcttaatctcttcagcagctctgcagggtctgctctacctagacagccacagtgg 204
Query: 241 ctt 243
|||
Sbjct: 203 ctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no463_l08.g1 MSMg01no463_l08.g1 CHROMAT_FILE:
MSMg01no463_l08.g1 PHD_FILE: MSMg01no463_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:14 2005
(427 letters)
>mm_chr2_152996630_152997455
Length = 826
Score = 698 bits (361), Expect = 0.0
Identities = 413/439 (94%), Gaps = 20/439 (4%)
Strand = Plus / Plus
Query: 1 actctagcctgtcagtccttgagcttggtgatctcctccctcagcatttttttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 196 actctagcctgtcagtccttgagcttggtgatctcctccctcagc-tttttttttttttt 254
Query: 61 ttggtttttcgagacagggtt------tctctgtatagccctggctgtcctggaactcac 114
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 ttggtttttcgagacagggttagggtttctctgtatagccctggctgtcctggaactcac 314
Query: 115 tctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgctg 174
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctgtagaccagactggcctcgaactcagaaatccacctgcctctgcctcccgagtgctg 374
Query: 175 ggattaaaggcgtgcaccaccacgcccagctctacctcaactttttaggtaactaaatta 234
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggattaaaggcgtgtgccaccacgcccagctctacctcaactttttaggtaactaaatta 434
Query: 235 taggcctg-----ttttttcaagtccaactccatacttttttctttgcttatatatctta 289
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taggcctgcaccat-----caagtccaactccatacttttttctttgcttatatatctta 489
Query: 290 cagtagagctt-aatttgtaaattagacaccgtaagattgacagagctggccgccctgga 348
|||||||| || |||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 490 cagtagag-ttgaatttgtaaattagacaccgtaagattgacagagctggtggtc-tgga 547
Query: 349 ttgggtagcaccttgttcacctagcttacataaagccttgggttcaatcctcagtaccac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgggtagcaccttgttcacctagcttacataaagccttgggttcaatcctcagtaccac 607
Query: 409 ataaaccaggcgtggtggc 427
|||||||||||||||||||
Sbjct: 608 ataaaccaggcgtggtggc 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 826
Length adjustment: 9
Effective length of query: 418
Effective length of database: 817
Effective search space: 341506
Effective search space used: 341506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
