Query= MSMg01no464_i19.b1 MSMg01no464_i19.b1 CHROMAT_FILE:
MSMg01no464_i19.b1 PHD_FILE: MSMg01no464_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:21 2005
(239 letters)
>mm_chr2_86118659_86119301
Length = 643
Score = 420 bits (217), Expect = e-122
Identities = 235/243 (96%), Gaps = 4/243 (1%)
Strand = Plus / Minus
Query: 1 ttgttctattgataattaaagatccatggggtagaaggg----tttttttagagttagaa 56
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 443 ttgttctattgataattaaagatccatggggcagaagggtttttttttttagagttagaa 384
Query: 57 gtcataaaatagccaaatatattacatctaatttattggtgggaaatcatggtgatattt 116
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 gtcataaaatagccaaatatattacatctaatttattggtggaaaatcatggtgatattt 324
Query: 117 aaaattttgagtgacagaagaatttaggaataggtaaatgtataccaaaatcttaccttt 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaattttgaatgacagaagaatttaggaataggtaaatgtataccaaaatcttaccttt 264
Query: 177 aaaaattaacatgaattagatttgcagataaaatatggggttctcagtcatgatagattt 236
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 aaaaattaacatgaattagatttgcagataaaatatggggttctcagtcatggtagattt 204
Query: 237 caa 239
|||
Sbjct: 203 caa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 643
Length adjustment: 9
Effective length of query: 230
Effective length of database: 634
Effective search space: 145820
Effective search space used: 145820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_i19.g1 MSMg01no464_i19.g1 CHROMAT_FILE:
MSMg01no464_i19.g1 PHD_FILE: MSMg01no464_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:21 2005
(481 letters)
>mm_chr2_85964126_85965008
Length = 883
Score = 920 bits (476), Expect = 0.0
Identities = 480/482 (99%), Gaps = 2/482 (0%)
Strand = Plus / Plus
Query: 1 aaatagttctctgcttgttttcattattatttgcatgatttttttgacacagggtttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatagttctctgcttgttttcattattatttgcatgatttttttgacacagggtttctt 260
Query: 61 catgaatctcagagtaatttcaaatgagctatgtgatgcagggtggttttaaatgtgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgaatctcagagtaatttcaaatgagctatgtgatgcagggtggttttaaatgtgtga 320
Query: 121 tcttgcctgggcctctgagttctttgattttttcctaagccactgtgactggcttctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgcctgggcctctgagttctttgattttttcctaagccactgtgactggcttctgat 380
Query: 181 ttccaagtcagcacatctgaggaagtgattgccttccttacttcagtttgtatgtatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccaagtcagcacatctgaggaagtgattgccttccttacttcagtttgtatgtatata 440
Query: 241 tttatatagacagaagaacacatttacctcacctgccacaaacaaaaaaaa--caaaaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tttatatagacagaagaacacatttacctcacctgccacaaacaaaaaaaaaacaaaaca 500
Query: 299 aacccaaagcatacagttcacactcactgtagcagatacaaaccttcacaatgcttgcaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacccaaagcatacagttcacactcactgtagcagatacaaaccttcacaatgcttgcaa 560
Query: 359 ctaatttgaaggaatttggttttcttgatctttttgtttcttttgtcttcatagaattaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaatttgaaggaatttggttttcttgatctttttgtttcttttgtcttcatagaattaa 620
Query: 419 ctgttcacagtgatacttaaacattgggctgaagcttttatatttattaatacttttctt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttcacagtgatacttaaacattgggctgaagcttttatatttattaatacttttctt 680
Query: 479 cg 480
||
Sbjct: 681 cg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 883
Length adjustment: 10
Effective length of query: 471
Effective length of database: 873
Effective search space: 411183
Effective search space used: 411183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
