Query= MSMg01no465_b18.b1 MSMg01no465_b18.b1 CHROMAT_FILE:
MSMg01no465_b18.b1 PHD_FILE: MSMg01no465_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:05 2005
(470 letters)
>mm_chr2_162814956_162815825
Length = 870
Score = 870 bits (450), Expect = 0.0
Identities = 462/466 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtactatgccagaagagtctgcctttatgagcggatgctctagtttgagccct 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtactaagccagaagagtctgcctttatgagcggatgctctagtttgagccct 264
Query: 65 tgactagtgacacagttagagagcaagagcgacaaggaaacaaagccagaggacaggatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgactagtgacacagttagagagcaagagcgacaaggaaacaaagccagaggacaggatg 324
Query: 125 gctctcgtagagggccagggcaagcattagggttttctcaggtctgcagaggctcagcgc 184
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 325 gctctcgtagagggtcagggcaagcattagggttttctcaggtctgcagaggctcaacac 384
Query: 185 cggagaagaagagtccagtaaggggactaagccaaaagggaccacaggacatctcagagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cggagaagaagagtccagtaaggggactaagccaaaagggaccacaggacatctcagagc 444
Query: 245 agagtggataaagggagagtgacaggtgagttgtcaaagcctcggctggctgagcaatga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagtggataaagggagagtgacaggtgagttgtcaaagcctcggctggctgagcaatga 504
Query: 305 ggacatcagtgtcatcactggcacctgagtggacagtcatccactgttcactgatccctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggacatcagtgtcatcactggcacctgagtggacagtcatccactgttcactgatccctt 564
Query: 365 gggatgcttgaggtgggtacaggattgggacaggaaaggagtgagctgaggaaggcagat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggatgcttgaggtgggtacaggattgggacaggaaaggagtgagctgaggaaggcagat 624
Query: 425 gactctagaggagtttaatgaagagagagagagaaagacaggcagt 470
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gactctagaggagtttaatgaagagagagagagaaagacaggcagt 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_b18.g1 MSMg01no465_b18.g1 CHROMAT_FILE:
MSMg01no465_b18.g1 PHD_FILE: MSMg01no465_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:05 2005
(457 letters)
>mm_chr2_163031555_163032416
Length = 862
Score = 803 bits (415), Expect = 0.0
Identities = 449/465 (96%), Gaps = 11/465 (2%)
Strand = Plus / Minus
Query: 1 aatcctccgtggatgaaacatagatttcccagtcccaaaagcacgacagagagagattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aatcctccgtggatgaaacatagatttcccagtcccaaaagcacgacagagagagattca 603
Query: 61 caaggaggccggactgctgtcctgctgtgaattgagaaacttggatccaacctcatctct 120
||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 602 caaggaggctggactgctgtcctgctgtgaattgagaaacttggattcagtctcatctct 543
Query: 121 gactttcacctgctactccatgactgacttttgcc---tt-ctgtgaagcagagatcacg 176
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 542 gactttcacctgctactccatgactgacttttgccgtgttgccgtgaagcagagatcacg 483
Query: 177 ggaccccagatcctccatgccagaagccaggagccccggtgcttaccaaacagttactac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggaccccagatcctccatgccagaagccaggagccccggtgcttaccaaacagttactac 423
Query: 237 at----tttttaaaaaaaagaataacgtgcttgctttatacctactagacaattttttct 292
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 attttcttttt---aaaaagaataacgtgcttgctttatacctactagacaattttttct 366
Query: 293 catgcatgctaacattgctgtaattaataaattacacaagtattttgaagctaaaatgaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catgcatgctaacattgctgtaattaataaattacacaagtattttgaagctaaaatgaa 306
Query: 353 gctcagtggctttttatcattgtgtgtttgctcaaacaaaacccagcagaagagagcagc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctcagtggctttttatcattgtgtgtttgctcaaacaaaacccagcagaagagagcagc 246
Query: 413 tagtgctcatgactttgatttaaagaggctgggaatctctatgtg 457
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagtgctcatgactttgatttaaagaggctgggaatctctatgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 862
Length adjustment: 10
Effective length of query: 447
Effective length of database: 852
Effective search space: 380844
Effective search space used: 380844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
