BAC Information

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BAC

Clone NameMSMg01-465K21
Chromosome2 (Build37)
Map Location 85,212,220 - 85,212,471
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988
Downstream geneGA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465K21.T7 (MSMg01no465_k21.b1)MSMg01-465K21.TJ (MSMg01no465_k21.g1)
ACCAG549803AG549804
length826816
length of high quality
(start - end)
54 (115 - 168)243 (65 - 307)
definitionCHROMAT_FILE: MSMg01no465_k21.b1 PHD_FILE: MSMg01no465_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:53 2005CHROMAT_FILE: MSMg01no465_k21.g1 PHD_FILE: MSMg01no465_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCCGCTAAACGACTCACAAATCCGTACCTCCGCGGAATTCACTATNA
TTACATAACAATCTCTTGGCTACTTCCCAGTATAGACTTATAAATTTGTG
AGCTCATGTGCCGCGAAAAGCCACATCCCACATGTTTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCCCCAANAAACAACCCCCCCCCCAATTTTCCTCT
CCCCCTTCTTCTTTTTTCAACCCCTTCTCCCCCTCTTACTTTTTTTTCTC
TTCCCCTTTTCCCCCCACACCCCCCCTTCCTCCAATCCCACAAACCCCCC
CACTTTCCCTCATTTCCCCAACCCCCCCCCCCTTAAAANAATTTTTTTTC
CCCCCCCCCCCCCCTTCTTCCCCATCTTTTTTTATTTTTTCCTTTTTTCC
CCCCCCCCCCCCCCTTTTATTTTTCCCTCCTCCCCCCCTCTCCCCCCCTT
TCTTCTCCTCCTACTCCCTCTTCCATCCTCCCCTCACCCCCCCACCACCT
ATCTCCCCCCCCTTCTTACCTCCCCCTATTTCTTTCCCCTCCACTACTCT
CCCTCCCCCCTCCTTCCCTCTCTCCTTCTTCTCTCTCCTTCTCTCCTCCC
CCCTATTTATACCCCCCTCCACCCCCTCCCCCCCCCCTCCCCTTCTCTCC
TCTTTCTTTCTCTTTAGTTTACCCCATTATTCCCCCATCCTCTCCTTTCT
CCTCTCTTCTCTCTCATTCTTCCCCCTCCCCCCCCTTCAACCATCCTCTC
TCTCTTTCTCAATCCTTCCCTCTCCTTTTTCCCTTCTCCCTCTCTTTTCC
TTCCTCCCTCCTTCCCCTTCCCCTAA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCTGATTTACTTCTCTCACTACAGTCCAGAGTGCG
CGGGTTCTTGTCAAAGTACAAGAACAAAATACAAATAATCTGTAGGTAGG
TCATGCTTGCAGAGCTGGAACAATGGTACAATCTCAGGTCCAGCAGAACT
GTGCATGGGGTTGTTGGCTAGTTTTGTGCCACCTTGACACAAGGTGTAGT
TGAGGGAATCGTATGTGTCCCCAGCAAATATACAGAAGAGGACTGCTGGG
TCTGGGTTCATNCTGATTGCAACTAACTGCCAGGAGACTGGAGGCCCCAG
TTAGTGCTCAGGNCTGGAGGGGCAGCGTCTTTTCTCTTCTTTTCTCTTTT
CCCCCCCCCCCTTCCTTTTTTCCCTTTCTCACCCCATTTTTTCTTCTCTT
TTCTTTTCCCTCTTCTATTCCTACTTATGTATACTCGTCTTTCCTTTGCC
CTTTTTTAATTCTTCTTCTTTCTACCTTTCCATCTCTATTTTTTTTTATT
CTATTTCTTACTTACTTACATCACCTTGTTATAACTTTCACTATTTTTCC
TACATATTCTTCATTCCTTTTCAACTTTTTTTTCTCTTTTTCTCAACGTC
CCCCTACTACCTATCTCCCCCTTCCTCTCTCTTTCTTTCTACTTTTTTCT
CACTCAATTCCAATCGCTCTCCTCCTTCTCTAATCCCCCCTCTTCCTTAT
TTCATCATTCACTCTCTCACCCTCTTCCCCCCTACCCCACCCACTTCTTT
CCTTATCTATTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_k21.g1 MSMg01no465_k21.g1 CHROMAT_FILE:
MSMg01no465_k21.g1 PHD_FILE: MSMg01no465_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:53 2005
         (243 letters)



>mm_chr2_85212020_85212662
          Length = 643

 Score =  354 bits (183), Expect = e-102
 Identities = 232/253 (91%), Gaps = 11/253 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgatttacttctctcactacagtccagagtgcgcgggttcttgtcaaagtacaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgatttacttctctcactacagtccagagtgcgcgggttcttgtcaaagtacaagaa 260

                                                                       
Query: 61  caaaatacaaataatctgtaggtaggtcatgcttgcagagctggaacaatggtacaatct 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaatacaaataatctgtaggtagctcatgcttgcagagctggaacaatggtacaatct 320

                                                                       
Query: 121 caggtccagcagaactgtgcatggggttgttggctagttttgtgccac-cttgacacaag 179
           ||||||||||||||||  ||||||||||||||||||||||||| || | |||||||||||
Sbjct: 321 caggtccagcagaactacgcatggggttgttggctagttttgtccc-ctcttgacacaag 379

                                                                       
Query: 180 gtgtagt----tga-----gggaatcgtatgtgtccccagcaaatatacagaagaggact 230
           ||| | |    |||     ||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 380 gtggaatcatctgaaaggagggaatcatatgtggccccagcaaatatacagcagaggact 439

                        
Query: 231 gctgggtctgggt 243
            ||||||||||||
Sbjct: 440 tctgggtctgggt 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)