BAC Information

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BAC

Clone NameMSMg01-465M18
Chromosome2 (Build37)
Map Location 170,570,053 - 170,570,452
singlet/doubletsinglet
Overlap geneDok5
Upstream geneTshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik
Downstream geneLOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M18.T7 (MSMg01no465_m18.b1)MSMg01-465M18.TJ (MSMg01no465_m18.g1)
ACCAG549893AG549894
length809774
length of high quality
(start - end)
370 (32 - 401)400 (62 - 461)
definitionCHROMAT_FILE: MSMg01no465_m18.b1 PHD_FILE: MSMg01no465_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:02 2005CHROMAT_FILE: MSMg01no465_m18.g1 PHD_FILE: MSMg01no465_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACTCACTATTCGCAAGGATCCGCGGAATTCTGGGATTC
CCGGTGTGTGCCACCATCCCTGGCTCTCAGCTCCACAAATCATCATCCCA
TTTGACAGCGAAATTGAAGCATGGAGAGTCTAAGTAAGATCACCTGGGCA
GGGAGATGGCTCAGTGGTTAAGGACACACGCTGCTCTCACAGGGGATCTG
GGTTTGGTTCTCCACAGTCCTCTGTAACTCCTGTTGCAGAAGGTCCTATG
GTACCAAGCACACGTTTGGTGTGCAGACGTACATGAAGGAAAAAAAAAAC
CACTCACTTTTTTAAAATAAATACTTAAAATAAATAAGAGACACCTTGAA
AACAATCTCATTGGTAGAAAGAAGCAGAAACACTCCTCGAGCCTTAAATG
GCGAGACCTAGAATTTGCCTTGTAACTACTTTCCTAATTACAGAAGGAAA
AAAGGTGTACTACGAGATACTCGTATATGTCATATGATCCTACGTGTTCG
CCCGTTGCTCTTTGCCTGGCTGTTGCGTACCAGGGGTTTTTTACTGGCCC
ATCTCCCCCCCCCTGTTTTGGCTTTTTTCCGTCCCTCCCCGTTTTTCTCA
CATTTCCTTAGCTGTCTTTTCTTATATCCCTCTCACTTCTATTCAAATTG
CCCCAATCTTTTCTTTTCTTTTATTATCTCTTTCTCTTCTCTTGTTCTGT
CTCCTCTTTTCTTTACTCCTCTTCTTTTCCTCTTGTGTCACCGTTTCTCT
TTTCCCTCCCTACTGCTTTTTATTATTTCTCTCTCACTTATTTTTTTTTT
CGATTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAAGACAAAGCCTAATTGCAGGTCTGGGATCAGTCAGAA
GAAAGGTCCGGAGAGTGGAGCTCTGTGCTGCTTAGGAAGCCATTAACAGA
TAGCTATCTAAATCTCCTGCGATTACGTTCTAGCTAGGGGCTTTCAGGTG
AAACAGGGCGATCCCATCATTTGCCTCTCCTAAAAGCCAATCAAACGAAC
CTGCCAATCATCTGGACGGGAAAATGCTCCTTGAGGAAAGCTATCTGGAG
ACTTCTTTTTTAGTAGAAACCCTCCTTAACATACAGGTTGGCACAACAGT
CTACCTGGCCATTGTCTACTCTCCCACTCTCCCCTGTGAAGTTTCTACCC
ACCCTCTGCTCCACTCCCCTCTGCGGTCTTTTGACAGAGATCAGAAGGAC
TGAATAGCTACGGGGATTCCAGAGTGACAGAGACATATCAGTTGTGAGAA
CACTCTCTTGGGCACAGGGGGAAAGCCCAGACCTATCTACGGCTGCGCCC
GGGCCCTGAAATCCTGGATAGGTTCCCACGCCCCTCGCAGTAGCTCAACT
CCAAACTGGGCCAGAAGCCTTTATTTTATTCCTCCTGGTCGCCTTACTTT
TTTCTTATTCTCCCTACAAACCAAATTTGTCGTCTGCCTCCCCTTGGGTG
TATGTGTCTTTCTTTTTTTTCTTTCTCCTCCCCTCTTTTCTCCTCCTCTT
TTCCTTTCTTTTCTTCCCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m18.g1 MSMg01no465_m18.g1 CHROMAT_FILE:
MSMg01no465_m18.g1 PHD_FILE: MSMg01no465_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:02 2005
         (400 letters)



>mm_chr2_170569853_170570652
          Length = 800

 Score =  731 bits (378), Expect = 0.0
 Identities = 394/406 (97%), Gaps = 12/406 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagacaaagcctaattgcaggtctgggatcagtcagaagaaaggtccggagagtggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaagacaaagcctaattgcaggtctgggatcagtcagaagaaaggtccggagagtggagc 541

                                                                       
Query: 61  tctgtgctgcttaggaagccattaacagatagctatctaaatctcctgcgattacgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tctgtgctgcttaggaagccattaacagatagctatctaaatctcctgcgattacgttct 481

                                                                       
Query: 121 agctaggggctttcaggtgaaacagggcgatcccatcatttgcctctcctaaaagccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agctaggggctttcaggtgaaacagggcgatcccatcatttgcctctcctaaaagccaat 421

                                                                       
Query: 181 caaacgaacctgccaatcatctggacgggaaaatgctccttgaggaaagctatctggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 caaacgaacctgccaatcatctggacgggaaaatgctccttgaggaaagctatctggaga 361

                                                                       
Query: 241 cttc------ttttttagtagaaaccctccttaacatacaggttggcacaacagtctacc 294
           ||||            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttcagaagg------agtagaaaccctccttaacatacaggttggcacaacagtctacc 307

                                                                       
Query: 295 tggccattgtctactctcccactctcccctgtgaagtttctacccaccctctgctccact 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggccattgtctactctcccactctcccctgtgaagtttctacccaccctctgctccact 247

                                                         
Query: 355 cccctctgcggtcttttgacagagatcagaaggactgaatagctac 400
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cccctctgcggtcttttgacagagatcagaaggactgaatagctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)