BAC Information

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BAC

Clone NameMSMg01-466A20
Chromosome2 (Build37)
Map Location 160,491,061 - 160,619,734
singlet/doubletdoublet
Overlap geneTop1, Plcg1, Zhx3
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream geneLpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466A20.T7 (MSMg01no466_a20.b1)MSMg01-466A20.TJ (MSMg01no466_a20.g1)
ACCAG550088AG550089
length766784
length of high quality
(start - end)		455 (74 - 528)399 (82 - 480)
definitionCHROMAT_FILE: MSMg01no466_a20.b1 PHD_FILE: MSMg01no466_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:23 2005CHROMAT_FILE: MSMg01no466_a20.g1 PHD_FILE: MSMg01no466_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,491,061 - 160,491,515)(160,619,336 - 160,619,734)
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTTGTTCACCAGGCTGGCCTCAAAACTCAGAAATCTGC
CTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGTGCCACCACACCC
AGCAGGGGTAAAGGTTTTAATCTATCAGTTTACCTACTAGTAGTATACAG
GGCATCTATACAGTTAAGTTAGTAGATTATTAAGTTTTTTAAATGTTAAA
TGATTATTTAACAACTTTCTTTGTGGCAATGCTACTTGTATAGTGATTTA
AATCTACTGTATCATTTTTCCTCTTATATCCAAGCCTGCCATGTAGAACT
TAACTGTATTGATTTATAGAGCTCAACAGACATTCATATCTCTTATTACA
CTTACATTGATTTGTATGTAGAGGTTGGTGGGCAGACAGGGTTATGGAAC
ACATGTTCTGGTCAGAAGACAATCCATGGAAGTCATTTTTCTGCTGTGTA
GATTCCTGGGGATTGCACATAATTGTCATGTTTGGCATCAGGGACTTTTC
CAGCCTGAGCTGGAAAAGCCATAGAGATTTCAATTAAGAACTTTGTCTTC
TTTGTTTTCCGCTTTGGTTTGTTTTTTAATTAAAACCCCTTCCAGTATCT
GGATTACAGTCCGAGGGATCATCTAAAATATGCATGGACTTTTGAGTCTC
CATAATTAGGTCCTAAATGTGTTTGCCCATGGTATTTTTTCTCCGGTACC
CCTCTTCTTATTTTCG

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTTGACTTCCCTCAG
TGATGGTTTGTTACCTGGAAGTATAAAATGACATAAACCCTTTCATTCCC
AAATTGCTTTTGGTCATGGTTTTGTCACAATAATAAAAACCCTAACTAAG
ACAGAAATTGGTACCGTATTATGGGATATCTCAACATGTATATCCTGATC
CTATGTTTCTAGGAGGACTGTGGTATTAGTGAGGAAGGGCTGTGTGTAGC
ATTAACTATAACAGAACAGAATCATGTTGTTTCCTTACTTTTGTACATGA
TAGATACACTTAAAAAATTCGGCAAATTCGTATTATTTGGCAGATGGTAT
TATCATGCCTCAACAAGAAGTGCTCACATGCCAACTTTGGTACAACTGCT
GTACCAAAGTCTGAACTCAACATTCAGAAGGCTATTGGGTGATACCAGTG
TTGACTAATTATGGGAGTTGAACTTGCCTTTATTCTTATCCTTGTTTCTC
TCTTATTGCCTTGTTATTTTTTTTGATCCTCTAACATTTTCCGTTTTTTT
ATCTTCATTTCTATTTTCTCTTTCTCCTTTTAATTTCCTCCCAAATTTTA
TCCCTTTATTATATTATCTTACCTTCTTCCCTCTTTTCCCTACCTTTTCT
CCTAATCCAATATTATTTTGTTTTATTTTACATATTTTTCTCATTTTTTT
TCTTTCATTCTACCCCCCTTCTTATTCTATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_a20.b1 MSMg01no466_a20.b1 CHROMAT_FILE:
MSMg01no466_a20.b1 PHD_FILE: MSMg01no466_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:23 2005
         (455 letters)



>mm_chr2_160490861_160491715
          Length = 855

 Score =  849 bits (439), Expect = 0.0
 Identities = 451/455 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctggcctcaaaactcagaaatctgcctgcctctgcctccccagtgctgggattaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctggcctcaaaactcagaaatctgcctgcctctgcctccccagtgctgggattaaagg 260

                                                                       
Query: 61  cgtgtgccaccacacccagcaggggtaaaggttttaatctatcagtttacctactagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgtgccaccacacccagcaggggtaaaggttttaatctatcagtttacctactagtag 320

                                                                       
Query: 121 tatacagggcatctatacagttaagttagtagattattaagttttttaaatgttaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatacagggcatctatacagttaagttagtagattattaagttttttaaatgttaaatga 380

                                                                       
Query: 181 ttatttaacaactttctttgtggcaatgctacttgtatagtgatttaaatctactgtatc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ttgtttaacaactttctttgtggcaatgctacttgtatagtgatttaaatctattgtatc 440

                                                                       
Query: 241 atttttcctcttatatccaagcctgccatgtagaacttaactgtattgatttatagagct 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttcctcagatatccaagcctgccatgtagaacttaactgtattgatttatagagct 500

                                                                       
Query: 301 caacagacattcatatctcttattacacttacattgatttgtatgtagaggttggtgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacagacattcatatctcttattacacttacattgatttgtatgtagaggttggtgggc 560

                                                                       
Query: 361 agacagggttatggaacacatgttctggtcagaagacaatccatggaagtcatttttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacagggttatggaacacatgttctggtcagaagacaatccatggaagtcatttttctg 620

                                              
Query: 421 ctgtgtagattcctggggattgcacataattgtca 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgtagattcctggggattgcacataattgtca 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no466_a20.g1 MSMg01no466_a20.g1 CHROMAT_FILE:
MSMg01no466_a20.g1 PHD_FILE: MSMg01no466_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:23 2005
         (399 letters)



>mm_chr2_160619014_160619812
          Length = 799

 Score =  748 bits (387), Expect = 0.0
 Identities = 396/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccttgacttccctcagtgatggtttgttacctggaagtataaaatgacataaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctgccttgacttccctcagtgatggtttgttacctggaagtataaaatgacataaaccct 662

                                                                       
Query: 61  ttcattcccaaattgcttttggtcatggttttgtcacaataataaaaaccctaactaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttcattcccaaattgcttttggtcatggttttgtcacaataataaaaaccctaactaaga 602

                                                                       
Query: 121 cagaaattggtaccgtattatgggatatctcaacatgtatatcctgatcctatgtttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaaattggtaccgtattatgggatatctcaacatgtatatcctgatcctatgtttcta 542

                                                                       
Query: 181 ggaggactgtggtattagtgaggaagggctgtgtgtagcattaactataacagaacagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaggactgtggtattagtgaggaagggctgtgtgtagcattaactataacagaacagaa 482

                                                                       
Query: 241 tcatgttgtttccttacttttgtacatgatagatacacttaaaaaattcggcaaattcgt 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcatgttgtttccttacttttgtacatgatagatacacttaaaaaattcggcaaattcgt 422

                                                                       
Query: 301 attatttggcagatggtattatcatgcctcaacaagaagtgctcacatgccaactttggt 360
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 421 attatttggcagatggtattatcatgcctcaacacgaagtgctcacctgccaactttggt 362

                                                  
Query: 361 acaactgctgtaccaaagtctgaactcaacattcagaag 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaactgctgtaccaaagtctgaactcaacattcagaag 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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