Query= MSMg01no466_f04.b1 MSMg01no466_f04.b1 CHROMAT_FILE:
MSMg01no466_f04.b1 PHD_FILE: MSMg01no466_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:46 2005
(212 letters)
>mm_chr2_38306790_38307401
Length = 612
Score = 366 bits (189), Expect = e-106
Identities = 210/221 (95%), Gaps = 9/221 (4%)
Strand = Plus / Plus
Query: 1 ttttggaggtttccactaaaaagtcctctaactgccgttctgagcaagtgctccaccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggaggtttccactaaaaagtcctctaactgccgttctgagcaagtgctccaccctg 260
Query: 61 aagtttaatgaagctcctgtcttgaggtactctcttcaacagttttgaaaaaaaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtttaatgaagctcctgtcttgaggtactctcttcaacagttttgaaaaaaaaaaaaa 320
Query: 121 --aaaaac---ccaaaagcaataacaacaacaaaaaccctcagcccttgtctttggatgc 175
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaaaacaacccaaaagcaataacaacaacaaaaaccctcagcccttgtctttggatgc 380
Query: 176 tagtgtgtgtgtgtat----gtgtgtgtgtatatatgtgtg 212
|||||||||||||||| |||||||||| | ||||||||
Sbjct: 381 tagtgtgtgtgtgtatatatgtgtgtgtgtgtgtatgtgtg 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space: 122409
Effective search space used: 122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no466_f04.g1 MSMg01no466_f04.g1 CHROMAT_FILE:
MSMg01no466_f04.g1 PHD_FILE: MSMg01no466_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:46 2005
(275 letters)
>mm_chr2_38486721_38487395
Length = 675
Score = 524 bits (271), Expect = e-153
Identities = 274/275 (99%)
Strand = Plus / Minus
Query: 1 accaggttcaggacatttcacttgtttttgtttttgctgttttgagacatcatttcgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 650 accaggttcaggacatttcacttgtttttgtttttgctgttttgagacatcattttgttc 591
Query: 61 tagccctggctgtcctggaactcaatctgtagatcaggtggccacggactcaagagatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tagccctggctgtcctggaactcaatctgtagatcaggtggccacggactcaagagatca 531
Query: 121 tctgcctctgcttccttgctgctgggattaaaggtgagtgctctccctgcttggcaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctgcctctgcttccttgctgctgggattaaaggtgagtgctctccctgcttggcaggac 471
Query: 181 atataacattgataccaagcatttttaaaatggaaaatagagcacccttctcttgcattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atataacattgataccaagcatttttaaaatggaaaatagagcacccttctcttgcattt 411
Query: 241 ggactgtagtggtttgccacatgctgactttagga 275
|||||||||||||||||||||||||||||||||||
Sbjct: 410 ggactgtagtggtttgccacatgctgactttagga 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
