BAC Information

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BAC

Clone NameMSMg01-466L12
Chromosome2 (Build37)
Map Location 47,960,395 - 47,960,583
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466L12.T7 (MSMg01no466_l12.b1)MSMg01-466L12.TJ (MSMg01no466_l12.g1)
ACCAG550599AG550600
length748784
length of high quality
(start - end)
191 (122 - 312)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no466_l12.b1 PHD_FILE: MSMg01no466_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:18 2005CHROMAT_FILE: MSMg01no466_l12.g1 PHD_FILE: MSMg01no466_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCTATAATTGCGGCGCGAAAAGAACACAATTTCTTACCAGGCGNGGA
ANNCNCTACTTTCGAGTACCACGGAGAGATCCATCTGCTTTTGTGCACAT
AAGTGTTGTATGTTGTCCACAGAGAGATGCAGAGACAGAAAAACTAGAAG
GTTTGGACTGGGTCTCTAAGGGCAGAAGGGTTAGAGGAGGACTTGCCTAT
GCTTTTTAAAAATAGGACATCAAAAATTAAAAACAACATATATGAATATA
TAAAATATTCAGAGCACTGGAAGATACCGTCTCCCATCTCAAGGGCAGCG
ATTATTACTATTTGATATTTAAATCATTGAAAGAATCAATGCTGTTCTAA
GTCTAGACCATACGGCCAATCAAGGGGCTTCTGGGAAATTCTCTTAAGCT
TACAGGGGCTGGGAAGGGAATGAAACTCTGCAAGCTATTAGAAGACACAA
GGTTCTTCTTCCTTGTACTATGTGGCTTCTTTGTAATCCAAAAGGATCCC
TGGCTATAGAGTACATCAGAAATGTAGAGATTCCTTGAACAATCAACTGC
AGCTTTTAGTCCTTACATATCCTCTGAAGAAAAACTTGTTGTATAACACA
GGCTAGATGGATCCGCTTCTCTATTGCCTACATATTCTTTTTCTTGTTTA
TGAGATTGGAACATTTTTTCTTGCAACCTGATTAATCCCGTTCCCGGTTA
TCCTCGGTTGCTCGACTCCGAGTTGCCCTCTTTCTTATTTTCTCGTCG
NTTACGATGCAGTGGGAGGCCTGGCGGNCGCCTGGTACATGACTAGAGGT
GACCTATAGAATTACAGAGAAAGTCACTATATACAAGTATAGAACTCTCA
AAGGATATGTTCTTTGAAGAGATATCATTTGGAGTGACTAGCCTTTATTC
CTGGTTCTCTTTTTTTTTTTTTTAGTACACCTTCAAGACTATATTAGTTA
GGGTTCTCCAGAAGAACTGAACATATAAACAATATGTATATACACATTCA
CACACACACACACATATATATATATATATATATATATATAGAGAGAGAGA
GAGAGAGAGATTTTGATAGATTTGGANGGGGGCAGACAGAGAGAGCCGGC
GGAAGTTTTTTTTGCCCCCCTTTTGGAGGAGGGGGCCGTTCTCCCTTAGG
TCCTTTCTGTTGTGTTCCCCCCCCCTCCTGTTTTTTTTTTTTTCCCGCCC
TTTCCCTGATTTTATGCCGCCATCCGCGTCGAGCGATTTTGTTCTTTGTT
CTCGGGCTGTTGTGCGCTTTCCTCTTCCTTTGTTCCTCTTTGTTTTGTCG
TCTTCGTTTGGTTTTTCTTTCATCTCCGCTTGGTTCTGTTTGGTAGATGC
GCCCACTGTTAGTTCGCTCTGTGCGGTGCGGTTCCTCTTTTCCTCCCCAA
TCTCCTTCTTTTTTTTCTTTTTTCTGGACGAATCCTTATTTCTGTTTTTT
CTATTTTCTCTCTTCCTCTCCTTTTATTCTGCTAATCTCTAGGCGATATT
GTTTAGCGTCCGTTGTAGTCACTCGTTTCCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_l12.b1 MSMg01no466_l12.b1 CHROMAT_FILE:
MSMg01no466_l12.b1 PHD_FILE: MSMg01no466_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:18 2005
         (191 letters)



>mm_chr2_47960195_47960785
          Length = 591

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagagatgcagagacagaaaaactagaaggtttggactgggtctctaagggcagaagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagagatgcagagacagaaaaactagaaggtttggactgggtctctaagggcagaagggt 260

                                                                       
Query: 61  tagaggaggacttgcctatgctttttaaaaataggacatcaaaaattaaaaacaacatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaggaggacttgcctatgctttttaaaaataggacatcaaaaattaaaaacaacatat 320

                                                                       
Query: 121 atgaatatataaaatattcagagcactggaagataccgtctcccatctcaagggcagcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaatatataaaatattcagagcactggaagataccgtctcccatctcaagggcagcga 380

                    
Query: 181 ttattacta 189
           |||||||||
Sbjct: 381 ttattacta 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)