BAC Information

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BAC

Clone NameMSMg01-467C08
Chromosome2 (Build37)
Map Location 35,987,376 - 35,987,566
singlet/doubletsinglet
Overlap geneRbm18
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6
Downstream geneLOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467C08.T7 (MSMg01no467_c08.b1)MSMg01-467C08.TJ (MSMg01no467_c08.g1)
ACCAG550925AG550926
length733780
length of high quality
(start - end)
244 (72 - 315)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no467_c08.b1 PHD_FILE: MSMg01no467_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:55 2005CHROMAT_FILE: MSMg01no467_c08.g1 PHD_FILE: MSMg01no467_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCATTTGCGGCGTTAAACGACTCACTATATTTCGAGACACCGCGGAA
TTCACTCTGTTTTTCAGGCTGGCCTGGAACTCAGAAATTCGCCTGCCTCT
GCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGC
GTGCGCCACCACACCGGGCTCCCAGCTCCTTAACCTTATTTCTTAATATC
GTTCAGAAGTTGCTTTGAGTGTTTGTCCTTTAAAAATGTTCTCTTGCTTC
TTTTCAGCAAACTGTCAGGACTAGTTACAAAAGTATCTGATACAATTGTA
GGGGGTGCCCAGGGATTATTTTTTTGAGAGCATCAGATCTCCTGGAGGAA
ATAAAGTTACAGATGGTTGTGAGCCACCATGTGGATGCTGGGAGTGGAAT
CCAGGTCTTCTGGAAGAGCATCCATTCTCTGAACCACTGAGCAATCTCCA
GCCTTGATGGTAGTTTTTCAAATAGCATTTGAACAATGCAGTCTGTCATT
CATTTTCCCCACATTTATTTTGTCATTAGTTCTGGCTGCTCTGCGTCTTT
TGGTTATTAATCTGGGTTCTTCTTATGTTATACTAGGGCATCCTTCAGTC
CCTTTTCAGTCTGGCGCTCAAACATTTTGTTTTTTGTGCTCATGGTGTTT
TCCTCACCCCACGGTCAGCCATATAAATCTCCTTGGATCCCGATTTCTCT
GGGTTAACATAACGCGGTTCCCTCCTCGAATAT
CATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGTTCCCATATCTGGCTACAATCCTT
ATTCTAAGAATCTCCTGCCTCGATGTTGTGTACATTGCTCCCCAGTTATT
CCCTCATTCAATAAAGAAGCTGATCAGCCAATGACTGAGCAGGGGAAAGA
ATAGAGCTGGACTTCCCCCCAGCCAGGGGAGGGGACAGGAGAGAGAGGAA
GAGGAGATTCAGCCACTAGGAGGGCAAGAGGAGACATCATGGGAAAACAC
ACTTGAATCCCAGAGAGCTTTTCTATACTAAAATGCAACTATCACTGGGA
TGTTGGCTGGGAGGTACACAGATTAGCTTAGAGGAATAGAATAGATCAAT
GACTGCCCAGGTGTTGTGCAGTAAAGCTTGATTATACAAATCTAATAGTC
TCTGTCTTATTGACTTGGGAACTACCCAGGAATAGAGGAATACTGCCACT
TTTAAAACTAGCTTTACTTATAAGTGGTACCTATTCTTTGATATGCGCTC
ACTTTTTTTCGCTTACTTTACATCGGAAGAATTCCTTTCCCATTTCTTGT
TTTTGATCATATGTCCTCCGTTGTTTGCATCCCTTTTTTTTTCATGTTTA
CTTGTCCCGTTTTCTCCTTTTTTGTAATTTTTATCTGGACGTCTCTCTTC
TTTCCCTCTTCTTTCTTCTTCCCTTTTTCTCATCCCTCCTCACTTTATAT
ATTTCCTCTTCCCAGTAACTTCTCTTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_c08.b1 MSMg01no467_c08.b1 CHROMAT_FILE:
MSMg01no467_c08.b1 PHD_FILE: MSMg01no467_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:55 2005
         (244 letters)



>mm_chr2_35987077_35987720
          Length = 644

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Minus

                                                                       
Query: 46  ctgcctctgcctcccaagtgctaggattaaaggcgtgcgccaccacaccgggctcccagc 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctgcctctgcctcccaagtgctaggattaaaggcgtgcgccaccacaccgggctcccagc 431

                                                                       
Query: 106 tccttaaccttatttcttaatatcgttcagaagttgctttgagtgtttgtcctttaaaaa 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tccttaaccttatttcttaatatcgttcagaagttgctttgagtgtttgtcctttaaaaa 371

                                                                       
Query: 166 tgttctcttgcttcttttcagcaaactgtcaggactagttacaaaagtatctgatacaat 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgttctcttgcttcttttcagcaaactgtcaggactagttacaaaagtatctgatacaat 311

                      
Query: 226 tgtagggggtg 236
           |||||||||||
Sbjct: 310 tgtagggggtg 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)