BAC Information

Click to search

BAC

Clone NameMSMg01-467N20
Chromosome2 (Build37)
Map Location 155,435,586 - 155,611,782
singlet/doubletdoublet
Overlap geneMyh7b, Trpc4ap, Edem2, Procr, Mmp24
Upstream geneZfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss
Downstream geneItgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467N20.T7 (MSMg01no467_n20.b1)MSMg01-467N20.TJ (MSMg01no467_n20.g1)
ACCAG551471AG551472
length758775
length of high quality
(start - end)		534 (38 - 571)489 (67 - 555)
definitionCHROMAT_FILE: MSMg01no467_n20.b1 PHD_FILE: MSMg01no467_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:51 2005CHROMAT_FILE: MSMg01no467_n20.g1 PHD_FILE: MSMg01no467_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,611,301 - 155,611,782)(155,435,586 - 155,436,074)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGG
GACGGTTACTTAATAGAATGTGGCCACAGAAGGTCCCGAACATTTGAGTA
AGAGACCTTAATGTAGAGGGAACCGGCCATGTAAATTCATGAGAATTGAT
GCAGACTCAGGATTGGCCCAGGGGCAGAGCATGTCCCTAGCATGCAAGAG
ACTCGAGATCTTAGGAAGCCTTCTCCAGAGAGTCACGCTAATTCTCTTTA
CACCAGTGGGACTGGATAGGGTCCCATCTGAAGACATCATTTGGGACCTA
CATCCTGCCATATAATGAATATCACCTAACCTGGCTGGGTGCCTTCAGGC
AAATGACTTATCTTCTTCCTGCATCATGTTCCTCATCTGGTGACAAAGCA
TGATAAAAGAATTGTGAAGGGGCCTCAGTGACATGAAGAATCAGAGAAGA
ATGGTCTTTGAAAATATTCACATCCACATTCCCAAAGCCTGTGAACGCCA
TGGAGCANAAGAGACTGTCCTGACGGGATTAAGGATCTTCCAATAATCTA
ATAGCTAGGTTATTTTAATTAACTAAATTTGTGGCAATTTGTTGCAGCAG
CCACAGAAAACTAATACCTGAACATAAAGCTTTAATTCTGATACATAGTG
TCCCCCAGGTCCTTGTGTCTACCACTCTGCAATACAGGCAAGCTTTTAAT
TCCGGAGAAATAAGTGCCCCCAGGCCCCTTGGGCCCTACACTTCTGCAAA
ACCGGGAA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTGGTGTCAATTTGGAATGTCCTAGGTCTATGT
CCAGTGTCCAAGGTTCTTGGATCCTTTTATGCTCTGCTTAGCCTGGCATC
TGCTTGGAATCCTGGCTCTGGGGTTCTCCAGCTCTGTATCCAATGTTCTT
TAGATCATTTGAGCCTATAATTCTAAAATCCTGCAATGTCATCGAGCCCT
GAATGAATTGATGGACAGAAGATTCTGGAAGTGTCTTGACATATTCTTGA
GTTTTATCGGACAGACTGAATTGTAAGCATCCCACTCTTCATGAGAGTTG
GGTACAAGAAGTTGGCTTTCTGTAAATCATGAATGTCAGACTATGGAGGC
ACTCCTAACTGGTATAAACTTCTAAGTTTTCTTCCTCCTTTTACTGTATG
GCTTCATCTCTGGCTTTCTTTCTTTTCCTTCTTTCCTTCTTTCCTTCTTT
CCTTCTTTCCTTCTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTCCTTCTTTCCTTCCTTCCTTCCTGTCAGGGACCACATCTAG
TTTCTCAAGCTTGTTTGGTAAAAACTCCTCCCTGAATCTAAATCTTCCAA
CCTTCTTCCTAATAATAATTAATAATTAAAATATGGGGAGTAACTATAAA
CAATAATCACCTTAAATCCCGGCGACCGCCGGCCCCTGCCCCACCCCCGT
TCAACTCCTTATCTATTTCTCCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_n20.b1 MSMg01no467_n20.b1 CHROMAT_FILE:
MSMg01no467_n20.b1 PHD_FILE: MSMg01no467_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:51 2005
         (534 letters)



>mm_chr2_155611301_155612234
          Length = 934

 Score =  911 bits (471), Expect = 0.0
 Identities = 479/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggacggttacttaatagaatgtggccacagaaggtcccgaacatttgagtaa 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattctgggacggctatttaatagaatgtggccacagaaggtcccgaacatttgagtaa 423

                                                                       
Query: 65  gagaccttaatgtagagggaaccggccatgtaaattcatgagaattgatgcagactcagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagaccttaatgtagagggaaccggccatgtaaattcatgagaattgatgcagactcagg 363

                                                                       
Query: 125 attggcccaggggcagagcatgtccctagcatgcaagagactcgagatcttaggaagcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 attggcccaggggcagagcatgtccctagcatgcaagagactcgagatcttaggaagcct 303

                                                                       
Query: 185 tctccagagagtcacgctaattctctttacaccagtgggactggatagggtcccatctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctccagagagtcacgctaattctctttacaccagtgggactggatagggtcccatctga 243

                                                                       
Query: 245 agacatcatttgggacctacatcctgccatataatgaatatcacctaacctggctgggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agacatcatttgggacctacatcctgccatataatgaatatcacctaacctggctgggtg 183

                                                                       
Query: 305 ccttcaggcaaatgacttatcttcttcctgcatcatgttcctcatctggtgacaaagcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccttcaggcaaatgacttatcttcttcctgcatcatgttcctcatctggtgacaaagcat 123

                                                                       
Query: 365 gataaaagaattgtgaaggggcctcagtgacatgaagaatcagagaagaatggtctttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gataaaagaattgtgaaggggcctcagtgacatgaagaatcagagaagaatggtctttga 63

                                                                       
Query: 425 aaatattcacatccacattcccaaagcctgtgaacgccatggagcanaagagactgtcct 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 62  aaatattcacatccacattcccaaagcctgtgaacgccatggagcaaaagagactgtcct 3

             
Query: 485 ga 486
           ||
Sbjct: 2   ga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_n20.g1 MSMg01no467_n20.g1 CHROMAT_FILE:
MSMg01no467_n20.g1 PHD_FILE: MSMg01no467_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:51 2005
         (489 letters)



>mm_chr2_155435386_155436274
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggtgtcaatttggaatgtcctaggtctatgtccagtgtccaaggttcttggatcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggtgtcaatttggaatgtcctaggtctatgtccagtgtccaaggttcttggatcctt 260

                                                                       
Query: 61  ttatgctctgcttagcctggcatctgcttggaatcctggctctggggttctccagctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgctctgcttagcctggcatctgcttggaatcctggctctggggttctccagctctg 320

                                                                       
Query: 121 tatccaatgttctttagatcatttgagcctataattctaaaatcctgcaatgtcatcgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatccaatgttctttagatcatttgagcctataattctaaaatcctgcaatgtcatcgag 380

                                                                       
Query: 181 ccctgaatgaattgatggacagaagattctggaagtgtcttgacatattcttgagtttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgaatgaattgatggacagaagattctggaagtgtcttgacatattcttgagtttta 440

                                                                       
Query: 241 tcggacagactgaattgtaagcatcccactcttcatgagagttgggtacaagaagttggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcggacagactgaattgtaagcatcccactcttcatgagagttgggtacaagaagttggc 500

                                                                       
Query: 301 tttctgtaaatcatgaatgtcagactatggaggcactcctaactggtataaacttctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctgtaaatcatgaatgtcagactatggaggcactcctaactggtataaacttctaag 560

                                                                       
Query: 361 ttttcttcctccttttactgtatggcttcatctctggctttctttcttttccttctttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttcttcctccttttactgtatggcttcatctctggctttctttcttttccttctttcc 620

                                                                       
Query: 421 ttctttccttctttccttctttccttctttccttctttccttccttccttccttccttcc 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ttctttccttctttccttctttccttctttccttccttccttccttccttccttccttcc 680

                    
Query: 481 ttccttcct 489
           |||||||||
Sbjct: 681 ttccttcct 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |