BAC Information

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BAC

Clone NameMSMg01-468I10
Chromosome2 (Build37)
Map Location 179,849,090 - 179,849,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043168, LOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3
Downstream geneOsbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468I10.T7 (MSMg01no468_i10.b1)MSMg01-468I10.TJ (MSMg01no468_i10.g1)
ACCAG551977AG551978
length823860
length of high quality
(start - end)
317 (74 - 390)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no468_i10.b1 PHD_FILE: MSMg01no468_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:46 2005CHROMAT_FILE: MSMg01no468_i10.g1 PHD_FILE: MSMg01no468_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCCACGATACCTTCCCGGGCCAGTGTGGGACGGATGCCAGCCAGACT
CCATCTCATAGTCTTTAGGGCAACTCCATACCCAGCATGGAGCTGGCCCA
GGGAACTATGGTTCCTTCTTCCTGGCTGTACTGGAGCTGATGGAAGATGG
GTCCCTGTCTTTCTTCCCAGTATCCCCTGAGCACCTGCCACACACTGACC
CTGGCTTGGACACAGATGCAGAATACACCTGAGCAAAGAGAGGTCCCGGA
TCCTGGTCTAGGATCCACAAGTCCCAGGGACCCATATCGGGTGGCAAGAA
TATACGCACATCCTCGTGCAGGGAACTGGCAGGGCAGGAGAGAACTGGAG
GAGCGACAGCTGGGCTGGGCTAGATTTAGCTTGCTGAGAGCCAAATGCGT
TGGCCGGAGTCGCTGGTTGGTCCTCGGATGCCATTAAGCTGTATACCTGA
TGGGAGTGTCAGGTTAAACTTGCCCGTTGGATCTTATATGCCTTACCTTA
CATCTTTCCCCATTATTTACTATGGTGTTTTTCTTCCATTCCGCTTATTT
TTCCACTCCCCGGGCCTTTTATCTTCCCTCTCTTCTTCCCCTCTATTCTT
TTTTCTTTTCATCATCTCTCCCTTTCTTTTTATTTTCTTTATCTTCTCCT
TTTCTTCATTTTTTTTTCCCTTATTCTTCTCTATATTTCTTATCTCCTTC
TTTTTCACTCCCTCTCTATTCTATCTCTTCCCCACCCACCATATATTACT
ACTCACCCTGTCATACTTTATTG
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATCTGCAGTTATTAGACACAAAATG
GACCTCAAAAGAGATCCGAGCTGGGCTGCAGATAAGGGTGTCCCTGGCAT
GTACACAACCCTGCTTTCTCCCCTCATCACTCAGGAGGTGGGCAGGAAGA
CCTCCAGTTTGCCATGCAGCTACGTGGCAAGTTAGAGGCCAGCCTCAGAT
TCATGAGACCCATTTGAAAAGGAAACAAGGCAAGGGGCACCTGAACTGCT
GCTACTCTGTGGCTGGGGAGGGAGGTTTTTTTTTTCNTCCCCCNCNNTCC
TCCNCNNNTTNCTCTTTCTTCCCCTCCCCTCTTTATTTGTCCTTTTCTCT
TCTTTCTCTTCACTTTCTTCCTCCCCTTCCCCATTTCTCACATCCGTTTT
ATCGTTGTCTTTTTTACTTTCTCTATTTCTTTTTTCGTTTTCTTTCCTTC
TCTTCTTTATTTCTTTTCTTCGTATCTTAATCTAACTTTTTTTTCCTTTA
CACTTTATCTATTTCCCTCTTCTTCCTCCCTCCTTTTTTCCTCCACTCTT
TTCTCCCCCCTTCCTTCTTTATACTTACATCACCTCATCCCATTCCATTT
ATTTTTACCTCCTCATTATCGTTTCTACTTCATCTCTTCTTCTCTTTCTC
TTTCATTTCTCCTTCCACTTTTCTTTCTCCTTCCCCCCCACTTCCCTCTC
TTTTTTTCTTATTTTCCTATTTACCTTACCCTTATTTTTCTACTCACAAT
CTCTTCATATATATCCCCTTTTTTTCTTCTCTCACTCTCCCTTACTTTTC
ACATCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_i10.b1 MSMg01no468_i10.b1 CHROMAT_FILE:
MSMg01no468_i10.b1 PHD_FILE: MSMg01no468_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:46 2005
         (317 letters)



>mm_chr2_179849026_179849742
          Length = 717

 Score =  588 bits (304), Expect = e-172
 Identities = 316/324 (97%), Gaps = 7/324 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtgggacggatgccagccagactccatctcatagtctttagggcaactccataccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagtgtgggacggatgccagccagactccatctcatagtctttagggcaactccataccc 329

                                                                       
Query: 61  agcatggagctggcccagggaactatggttccttcttcctggctgtactggagctgatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agcatggagctggcccagggaactatggttccttcttcctggctgtactggagctgatgg 269

                                                                       
Query: 121 aagatgggtccctgtctttcttcccagtatcccctgagcacctgccacacactgaccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagatgggtccctgtctttcttcccagtatcccctgagcacctgccacacactgaccctg 209

                                                                       
Query: 181 gcttggac-------acagatgcagaatacacctgagcaaagagaggtcccggatcctgg 233
            |||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccttggaccctgaacacagatgcagaatacacctgagcaaagagaggtcccggatcctgg 149

                                                                       
Query: 234 tctaggatccacaagtcccagggacccatatcgggtggcaagaatatacgcacatcctcg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tctaggatccacaagtcccagggacccatatcgggtggcaagaatatacgcacatcctcg 89

                                   
Query: 294 tgcagggaactggcagggcaggag 317
           ||||||||||||||||||||||||
Sbjct: 88  tgcagggaactggcagggcaggag 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)