BAC Information

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BAC

Clone NameMSMg01-468N03
Chromosome2 (Build37)
Map Location 88,871,910 - 88,872,371
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217
Downstream geneOlfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468N03.T7 (MSMg01no468_n03.b1)MSMg01-468N03.TJ (MSMg01no468_n03.g1)
ACCAG552202AG552203
length789815
length of high quality
(start - end)
456 (74 - 529)192 (66 - 257)
definitionCHROMAT_FILE: MSMg01no468_n03.b1 PHD_FILE: MSMg01no468_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:11 2005CHROMAT_FILE: MSMg01no468_n03.g1 PHD_FILE: MSMg01no468_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:11 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTCTCAAGATTACCTAATTGGGGTGAGAAAGAGGCATGATTTTCT
AAATGCAGTACACAATACCCATATGTTAAATCACATTATCACAAATTAAA
AATCTTTCATAAAGGTGCATACTATCTTACTTCACCTCACCAAATGCCCT
TCTGTGAAAAAAAAAATCTGAAGATTGTTGTCTTTTTATTCAGTGCTGTT
CAAGATTCTCTGCTTGTTTCCAGCTCATACTTCCACATTTAAGAACCCGA
GAGAAGCTCTTGCAGTAAGGGTGGAGGATGTTACCTCTGCTTCCTGGTTG
CTGTATTCATCATGGTTGCCGAACAAAACATAACAAAGGATCCAAAATTG
CCTCCTCATTACATCTGGAATTTAAAGAGGATTCCCTGAGACAACACTAA
TCTGTGAGACTAATTCTTAGCTCTCCAAGGACTTGAAAATTTTTTGGTCA
CATGAGATCCAAGAACCAATTTTGTGTAATGTTTCATTTATTCCACAATT
TACAGTGGCTTTCATGGCCATCTTGTAATTTTTTTTATCTAGAAAAACGT
TTTATTTGAAAATAAATCTAAATACCATCCCTTTTCACAAAGACTACAAC
ATTTTATATTGGGTCGGAACAATAGGCCCTTTCGTACAATTTCATTAAAT
AGATTTTCTTTTAATTGCTACCTAATCTACATTCATCTTTTCGAAAACAC
CGTTTTATTTTTCATTTAATCAACTTTCTTTTTTTCATG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTGGAATTCCTTATAAATCATATGATTATTGTT
TAGAACATGAAAAATGTAATAATATTCATGGTATTGTTGGGAGATTTTTT
TTTTGCGCTGTGTATTCCCATACTGATTGCTGTGTCTAATATCTGGTTGC
AGTCCAGATGTTAGCATTGTCACGCATCTCCCATGTCAATGGTATGTAAA
AACTGTTTTCCATCATCTCTGATTGGTTACTAAAGATCTGATCAGCCACT
AGCTGGACACGAGAGGGGGAGGGAATATTTTTGATCCCAGTGAGGCGGTC
TCAGGCGGAAAGTGTTCTAGGCCATTCACCCTGAGCAACACTGCCTGAAG
ATTTGCCATGATCCTCGCGCCCATGACATTAGTTGATTATAATTCTACCT
CATCTTTACCTCTCCCCTTATTTACGCTTATGTTCCTCATCCTCCCTCCT
GTCTGTTCTTTATCCCTCTCTACTCCCTTTCCATTTCTCGCCATTATCGC
TTTCTTCTCTCGCCCCTTTCTCCCCCTCTTACCCCCCCTCTACCTCCAAT
CTCAGCACCCCCACCCCTATCCCTTCTTCGCATTTTCTTCCCCCCCTCCT
CTCTCTTCTCCTATTCTCCCTCCTTCTCCTCCCTCAATCCTCCTCCTCTC
TCTCCACTACTCCCCCCCTCCTTACTCTTTCTTTTCCTTTTTTTCCTCTC
CTCTTTTCTCCTCGCCATTCCTTCTTTCCCCCTCCCTCCTCTTCTTTTCT
TCTTCTCTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_n03.b1 MSMg01no468_n03.b1 CHROMAT_FILE:
MSMg01no468_n03.b1 PHD_FILE: MSMg01no468_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:11 2005
         (456 letters)



>mm_chr2_88871710_88872571
          Length = 862

 Score =  663 bits (343), Expect = 0.0
 Identities = 433/471 (91%), Gaps = 24/471 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggtgagaaagaggcatgattttctaaatgcagta-------cacaatacccatatgt 53
           |||| ||||||||||||||||||||||||||||||||       ||||||||||| ||||
Sbjct: 201 tgggatgagaaagaggcatgattttctaaatgcagtaggctgtacacaatacccacatgt 260

                                                                       
Query: 54  taaatcacattatcacaaattaaaaatctttcataaaggtgcatactatcttacttcacc 113
           |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 261 taaatcactttatcacaaattaaaaatctgtcatagaggtgcatactatcttactttacc 320

                                                                       
Query: 114 tcaccaaatgcc-cttctgtgaaaaaaaaaatctgaagattgttgtcttt--tt-attca 169
           |||||||||| | ||||||||||||||    |||||||||| || ||| |  || |||||
Sbjct: 321 tcaccaaatgtctcttctgtgaaaaaa----tctgaagatt-tt-tctctccttcattca 374

                                                                       
Query: 170 gtgctgttcaagattctctgcttgtttccagctcatacttccacatttaag---aacccg 226
           |||| ||| ||||||||||||||||||||||||||||||||||||| ||||   ||||||
Sbjct: 375 gtgcggttgaagattctctgcttgtttccagctcatacttccacatctaaggagaacccg 434

                                                                       
Query: 227 agagaagctcttgcagtaagggtggaggatgttacctctgcttcctggttgctgtattca 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agagaagctcttgcagtaagggtggaggatgttacctctgcttcctggttgctgtattca 494

                                                                       
Query: 287 tcatggttgccgaacaaaacataacaaaggatccaaaattgcctcctcattacatctgga 346
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 495 tcatggctgccgaacaaaacataacaaaggatccaaaattgcctc-tcattacatctgga 553

                                                                       
Query: 347 atttaaagaggattccctgagacaacactaatctgtgagactaattcttagctctc-caa 405
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 554 atttaaagaggattccctgagacaacactaatctgtgagactaattcttagctctcaca- 612

                                                              
Query: 406 ggacttgaaaattttttggtcacatgagatccaagaaccaattttgtgtaa 456
           ||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct: 613 ggacttgaaaaatttttggccacatgagatccaaga-ccaattttgtgtaa 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 862
Length adjustment: 10
Effective length of query: 446
Effective length of database: 852
Effective search space:   379992
Effective search space used:   379992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)