BAC Information

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BAC

Clone NameMSMg01-468P20
Chromosome2 (Build37)
Map Location 35,966,002 - 35,966,214
singlet/doubletsinglet
Overlap genenone
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6
Downstream geneRbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468P20.T7 (MSMg01no468_p20.b1)MSMg01-468P20.TJ (MSMg01no468_p20.g1)
ACCAG552332AG552333
length867798
length of high quality
(start - end)
222 (77 - 298)213 (76 - 288)
definitionCHROMAT_FILE: MSMg01no468_p20.b1 PHD_FILE: MSMg01no468_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:24 2005CHROMAT_FILE: MSMg01no468_p20.g1 PHD_FILE: MSMg01no468_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCATGGAACATACCTGAACCAAGAGTAAAAGTCTTGCCTTGATT
AGAAAGGGAATAATTAGACTCTGGCTGGGTATTACTCTAGAAAATAAACA
TGTAATCTGTTTCCAAGTCACTTACTTTGTATCCTAGAGCCCAGTTCAAG
AATTTGTATGTGGATACAGCAATCTCTAAGACTCAGATTAGAGTTCCTAT
GCCCCACCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGAGACTGA
GTGTGTGTTTCTGTGTGCCGGATTTTTTTTTTTTTTGCCTGACTTTTTTG
TTCTTGTCCTGTTTTCATTTTTCTTGCGGTTGATAACGTATGTGCTGCTG
TGCTTCGTGTGGGTTCTTATTTTTTTTCCTCCCTTCCTCCTTTTTATTTC
TTTGTCTCTTTTTTATTCTCCTTCTCTTTTCATTCTTCTTTTTTTCTATT
TCTCTCTTTCTTCTTTTTCGTCTTGCTCTATTTCTTTTTTTTCTTCTTCA
TCACTCATTTTATATCTGTCTTTTCCCTTCTTCTCTTAGTTATCTCCTTC
CACTTGATCTCGTGTGTCTCTATATATGTCACTGTCTTTTATTTATTTTT
TTAGTTTCTACTTAGTTCTCTAACTGTCTTTCCATTTTCTCTCGATCATA
TTATCTACTGACGTCTCTGATTTCTATTCTCTTGATATTATGTCTCCTGT
TACTCTATCTGCTCACGATTTTCTTCTATTATTGTTTATTTACCTATCCT
CCACCACTTATTTCTTCCATATGTTACTTATACTTTTTCACATATTTATA
TTACCATCTATCTTCGN
NCCGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGACAATCTCTAGCAGGTGACTCTTCGTTTTGGA
GGACTCCACTGATCTAGTGTCTTCTTTGTACATTAGGAGTGATGACAATG
GCTTTGTCTGAGGAAGTTCTTACTGGACACTAGACCAATGCCAAGTTTCT
GTTGTTATCATCATCATCATTACATTTATTTACTCATTCTCTGTGTGTGT
GTTGTGTGTTATGTGTTTGTGGGGGCACATGTCTATGGGTGGTGGTCAGA
GGGTGACATGAGCGGATCATTTACTAATTTTCAGGGCGACCACACGAACC
GAAATCAGTTTTTTCTCCCCCTACTAGTTTCTTGTTTTACTGAGTCCTAT
CGATGTCCGCTGCACCCCCTTTTCTTTTTGTTTATCTGCCTTTCATTCCG
TGCCTCTTGCCTCTCTTTATTCTCCACCTCTCCCTTCGTCTTCCCCCTTT
TGTCCCTCCTTGTTTTATTTTTTTTTCTTCTCTCCCTATTTACCCTTATT
TTATCTCTCTATCATTATCCTATTCTTTCTTTGTTTTATTATGTCTTTCT
TTTCCTCTTCCTATTATTCCCTTATATTTTCTATTTCTTTCCTTTTTTTC
TCCCTCCTTACCGCTCTTTGAACCTATCCTTTTTTCTTTTCTTTTCCTCC
CTTATTATTCTTTACTCCTTCCTCCTTTTTTCCTTTTCCCCTCTCTTTCT
TCTTTCTCTCTTCTTCGTTCCTTTTCGCTCTCTTTCCGTTATAATCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_p20.g1 MSMg01no468_p20.g1 CHROMAT_FILE:
MSMg01no468_p20.g1 PHD_FILE: MSMg01no468_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:24 2005
         (213 letters)



>mm_chr2_35965802_35966414
          Length = 613

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcaggtgactcttcgttttggaggactccactgatctagtgtcttctttgtacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctagcaggtgactcttcgttttggaggactccactgatctagtgtcttctttgtacatta 354

                                                                       
Query: 61  ggagtgatgacaatggctttgtctgaggaagttcttactggacactagaccaatgccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggagtgatgacaatggctttgtctgaggaagttcttactggacactagaccaatgccaag 294

                                                                       
Query: 121 tttctgttgttatcatcatcatcattacatttatttactcattctctgtgtgtgtgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttctgttgttatcatcatcatcattacatttatttactcattctctgtgtgtgtgttgt 234

                                            
Query: 181 gtgttatgtgtttgtgggggcacatgtctatgg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gtgttatgtgtttgtgggggcacatgtctatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)