BAC Information

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BAC

Clone NameMSMg01-469D08
Chromosome2 (Build37)
Map Location 99,944,918 - 99,945,326
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469D08.T7 (MSMg01no469_d08.b1)MSMg01-469D08.TJ (MSMg01no469_d08.g1)
ACCAG552498AG552499
length775805
length of high quality
(start - end)
---408 (80 - 487)
definitionCHROMAT_FILE: MSMg01no469_d08.b1 PHD_FILE: MSMg01no469_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:42 2005CHROMAT_FILE: MSMg01no469_d08.g1 PHD_FILE: MSMg01no469_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAAATATAGGGGGNAAAACAATGATATTCAAACAAGGGNGGAAGCAAA
AATTTCCAAAACATCTAAACGAGTATGAGACCGGAGAAGAGGAGACACTA
TGTTCCTCGTATGACTAGACCTGCAAAACCCGTATTGCCTGTTTTCTCTC
TTGTGTACAAAAAGGAGCACAAGCCTCTATTTACAGATTGTACGAGCGAA
CGATGTCGAATGTCGCCATTACACCATAATCACTATAAATTTTTCTAAAA
CACACACATTTTCAAAAACCTGCCCACCTGTATCTATTACCCCAAAAGCA
CACAAAAGACAAACTTTTTTTTTTTACCCCAACATAACCCAATTCATAAA
TCAGTACATTTTTTCTCACTCTTCTATTTACCCTACATCCAATTTTAAAA
TATAAATATCCTCATTAAACCCCCTATATTATCCGATTTCTCTCTCCCCC
CTTATTTTGACTCTTAAATTTCACCTCCATCAACTTTCTTTTTTAAATCT
CCTTCTTATTACCTTTATTTTCTTCTTTATTTCCTCACCCTTTCCCACTC
TTTCTTTTTTTTTCCTTCCCCACCTTTTTTCCGCCCCCTTTCTCTCCCCT
CCTCCACACTTTCCTTTATAATTTATAATTTAACCCTCTCTCCTTCCCCC
CTTTTACCTTATTTACCATACTCTCACTTTTCTTTCTTCCCCCCTTCCCC
CTTACACTCCCTTTTTACTATTTTCCCCACTTTATTACCCTATTTTCCTT
CTCCACTTCTCTTCATTTTACCTTG
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGATGTGAAAAGATCTAC
TCATGAATCCCTGTTGTCAGGCTTTTCCTAGCCTGGACTTTATTAGTACA
CACCAGGACAGGAGACAGAATGAGCATTTCCTATTTTCTATTCCTCTTTT
CTTATACTTGCTGTCCATATTTGGACTCAGATATTAGATGAGAAAAGTAC
TATACTATAAGGATTCAGAATATTAGAAAAAAGAAGAGATTAAACTTATA
CAAAGATGAGCATATAGGATAAAATAGTTTTGTTTGTTGATTATTTGATT
GGCTTACTGATAACTCATCTCATACTATAACTTGGGATAATCTGAAATGC
ATAGAAGAGTTGACATGATATCCAAAGATTTGTGTACCTCCTGTCTTAGC
CTTACTTCTGCTGGATGTACAAACACTAGCCTTCACACCAAGTGACTGAA
ATTTGAATTACACAATATAGTTATCCAGATTCAATGAATACCTCCTTTGC
TTTTTAATCCCTTCCATATAAATCCTTATTACTTTAGCTCCCTACTCTTA
GCTGACAAAAATTTCCCCCTTCTGAAATATTGCCCCCCACCTTTCTTCAC
CATTTTTTTCCGCCCCTTCCTTTTTTCCGTATTATTTTCCTGGGTCGTTA
GTATTATACCCCCTCACTTTTGTATTTTTTGTCTCTCGTTCATTTTTCTC
TTCTCCCTTCTTCCTCTTCTTCTCGCTTCCGTTTTTCCTGCNACCTCCTA
TTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_d08.g1 MSMg01no469_d08.g1 CHROMAT_FILE:
MSMg01no469_d08.g1 PHD_FILE: MSMg01no469_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:43 2005
         (408 letters)



>mm_chr2_99944718_99945526
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%), Gaps = 1/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgatgtgaaaagatctactcatgaatccctgttgtcaggcttttcctagcctggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgatgtgaaaagatctactcatgaatccctgttgtcaggcttttcctagcctggact 260

                                                                       
Query: 61  ttattagtacacaccaggacaggagacagaatgagcatttcctattttctattcctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattagtacacaccaggacaggagacagaatgagcatttcctattttctattcctcttt 320

                                                                       
Query: 121 tct-tatacttgctgtccatatttggactcagatattagatgagaaaagtactatactat 179
           | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatatatttgctgtccatatttggactcagatattagatgagaaaagtactatactat 380

                                                                       
Query: 180 aaggattcagaatattagaaaaaagaagagattaaacttatacaaagatgagcatatagg 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggattcagaataatagaaaaaagaagagattaaacttatacaaagatgagcatatagg 440

                                                                       
Query: 240 ataaaatagttttgtttgttgattatttgattggcttactgataactcatctcatactat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaatagttttgtttgttgattatttgattggcttactgataactcatctcatactat 500

                                                                       
Query: 300 aacttgggataatctgaaatgcatagaagagttgacatgatatccaaagatttgtgtacc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttgggataatctgaaatgcatagaagagttgacatgatatccaaagatttgtgtacc 560

                                                            
Query: 360 tcctgtcttagccttacttctgctggatgtacaaacactagccttcaca 408
           |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tcctgtcttagccttacttctgctggatgtacaaacacaagccttcaca 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)