BAC Information

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BAC

Clone NameMSMg01-469J05
Chromosome2 (Build37)
Map Location 155,621,242 - 155,799,783
singlet/doubletdoublet
Overlap geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250
Upstream geneRaly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr
Downstream geneErgic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469J05.T7 (MSMg01no469_j05.b1)MSMg01-469J05.TJ (MSMg01no469_j05.g1)
ACCAG552780AG552781
length750763
length of high quality
(start - end)		250 (75 - 324)431 (80 - 510)
definitionCHROMAT_FILE: MSMg01no469_j05.b1 PHD_FILE: MSMg01no469_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:12 2005CHROMAT_FILE: MSMg01no469_j05.g1 PHD_FILE: MSMg01no469_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,621,242 - 155,621,491)(155,799,353 - 155,799,783)
sequence
NCCCTCTATAATTTGCGGGCGCTAAACGAATCACTATTTCCAGAGGATCC
GCGGAATTCAGAGGGTTCCACCTTAGCTTTGTGACCTTGGGTTCTCGAAG
CCTTCCACGGGGTCTGTCTCCTGCCATAGAGTTCTGCTATCATCTCACTC
GGTCCCACTCGGCCTTGCGGTAACAGAGACGGCTCCTGCTTCTCTTTCCA
GAGTGTGCTACTGTAAGAAAGTTTGATTCACAATTTCAAGTACTATTTCT
GAGTGTTTGCCTTGGGAAATGTCACACATTTTATCTTTTACTCATTCCCC
TCTAACTAGATGTTAGCTAAGCAGAGATATAAAGAGAGAGAGAGAGAGAG
AGAGAGAGAGCTAGCTCAGTCTCTTTTACTAAACTGCACCGATAGTCTCC
AAGTGAGCAAAGTCGTGGCCCTGCCTCCCTGACTTCTGCTCTCCAAATGA
CTCAATTTATCTGCGCAATCCTGACAACCCACGTTCAATCCTCAGAACCC
ATGTCAAGGTAGAAAAGGGCAGACTCCCTTTATCATCCTCTGGTCTCCAT
GTGTGGCATTGCATACAGCACCCCCAAACACATTATGAGCATACCGTAAT
AATAAATAAATAAATTTAAAAATTTACATATATTAAAAATTCTAGAATAG
AAGTAATCTCAGGGTAATGGCTGCTTTTCATTCCTCAAACATAAGAAAAG
GAGTTATAAGGATCCTGAGTTTGGGGCCACCCTAAGCTACCCTCCAGGAT


NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATAATACCAGGTGGTGGT
ACATGCCCTTGGGAGGTGAAGGAGGATCAGGAGGACAGTTTTGGCAGCAT
GAAACCCTGTCTCAAAATAAAAACAAAACAAAACAACAAAAAACCTCAAC
CAACCAACTAAAATACCCAGAATTAGGAAATACAGACATTTCTGGGTCTC
GGGAGATCTAGAAGAAACAAGTTTTCCCTACCAAAATGAAGGTTAAATTT
CTAACCAACAGAGATGATTTGGGGGCTATTTGGGCTATTCAGCACATCTG
CCTCACCCAATAGCATGAAATGCTTCGTCTCCTTCCAGGGACATGGACCT
TCCCTGTCCTGATCATTCATTCAATGCTCGGAGGTTCTGCTGCAGGTGTG
GGGGGGCCGGTGAGGGGGGATTTACAGTGCTTAAGGCTAATCCTTTGCTC
TCTACATTGCAAATGGCTCTCTTGCTCATTTCAGCTATAACTGGGAGCAG
CTCTGCCTATTCCACTGAGGACTTTGTCCTATTGTAGGTAATTCTCAGAA
AACCCAGTCCGGTTTTGGGAATTTAACTTTTTTTTATTGCCATAACCGCT
TCTCTCTTCCCCTCTCATTTTTATTCCCCCCTCTGCCCACCTATTTCATT
TGGCCTCTCCAGGATCAAATATTTATTACCTTTCCCTATGCGCCAGTTTT
TTTCCCGATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_j05.b1 MSMg01no469_j05.b1 CHROMAT_FILE:
MSMg01no469_j05.b1 PHD_FILE: MSMg01no469_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:12 2005
         (250 letters)



>mm_chr2_155621042_155621691
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttgtgaccttgggttctcgaagccttccacggggtctgtctcctgccatagagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttgtgaccttgggttctcgaagccttccacggggtctgtctcctgccatagagttc 260

                                                                       
Query: 61  tgctatcatctcactcggtcccactcggccttgcggtaacagagacggctcctgcttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctatcatctcactcggtcccactcggccttgcggtaacagagacggctcctgcttctc 320

                                                                       
Query: 121 tttccagagtgtgctactgtaagaaagtttgattcacaatttcaagtactatttctgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccagagtgtgctactgtaagaaagtttgattcacaatttcaagtactatttctgagt 380

                                                                       
Query: 181 gtttgccttgggaaatgtcacacattttatcttttactcattcccctctaactagatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgccttgggaaatgtcacacattttatcttttactcattcccctctaactagatgtt 440

                     
Query: 241 agctaagcag 250
           ||||||||||
Sbjct: 441 agctaagcag 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no469_j05.g1 MSMg01no469_j05.g1 CHROMAT_FILE:
MSMg01no469_j05.g1 PHD_FILE: MSMg01no469_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:12 2005
         (431 letters)



>mm_chr2_155799059_155799889
          Length = 831

 Score =  833 bits (431), Expect = 0.0
 Identities = 431/431 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaataataccaggtggtggtacatgcccttgggaggtgaaggaggatcaggaggacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agaataataccaggtggtggtacatgcccttgggaggtgaaggaggatcaggaggacagt 666

                                                                       
Query: 61  tttggcagcatgaaaccctgtctcaaaataaaaacaaaacaaaacaacaaaaaacctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttggcagcatgaaaccctgtctcaaaataaaaacaaaacaaaacaacaaaaaacctcaa 606

                                                                       
Query: 121 ccaaccaactaaaatacccagaattaggaaatacagacatttctgggtctcgggagatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccaaccaactaaaatacccagaattaggaaatacagacatttctgggtctcgggagatct 546

                                                                       
Query: 181 agaagaaacaagttttccctaccaaaatgaaggttaaatttctaaccaacagagatgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agaagaaacaagttttccctaccaaaatgaaggttaaatttctaaccaacagagatgatt 486

                                                                       
Query: 241 tgggggctatttgggctattcagcacatctgcctcacccaatagcatgaaatgcttcgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgggggctatttgggctattcagcacatctgcctcacccaatagcatgaaatgcttcgtc 426

                                                                       
Query: 301 tccttccagggacatggaccttccctgtcctgatcattcattcaatgctcggaggttctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tccttccagggacatggaccttccctgtcctgatcattcattcaatgctcggaggttctg 366

                                                                       
Query: 361 ctgcaggtgtgggggggccggtgaggggggatttacagtgcttaaggctaatcctttgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgcaggtgtgggggggccggtgaggggggatttacagtgcttaaggctaatcctttgct 306

                      
Query: 421 ctctacattgc 431
           |||||||||||
Sbjct: 305 ctctacattgc 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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