BAC Information

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BAC

Clone NameMSMg01-469L11
Chromosome2 (Build37)
Map Location 151,605,749 - 151,605,995
singlet/doubletsinglet
Overlap genenone
Upstream genePygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1
Downstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469L11.T7 (MSMg01no469_l11.b1)MSMg01-469L11.TJ (MSMg01no469_l11.g1)
ACCAG552886AG552887
length815756
length of high quality
(start - end)
100 (137 - 236)243 (71 - 313)
definitionCHROMAT_FILE: MSMg01no469_l11.b1 PHD_FILE: MSMg01no469_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:23 2005CHROMAT_FILE: MSMg01no469_l11.g1 PHD_FILE: MSMg01no469_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTTCCTTTCTCCTANAAAACGACTCATTTTCCAAACAGGATTCGCG
GAATTCACTATTCCGACCACGCTGGNCTCAGACTCAGAGATACACAGAAT
TCTGCCTCACAAGTACTGGCATTAAAGGCAAGTACACACTACCCCCTGGC
TAGCACACAGCAATTTTTGCTATTGGTTTTGCATGGCTCTAAGCATAGTG
TGTGTGGTGTGTGTGTGCATCTTCATATCTTTCAAAATCTTAACATGGTT
TACGATTTGTCCATCTGTCGCAGTCTTTTACCCAATGTGTTTTCTGCTCC
CTGCATAACTGACTTTTTTTTTTTTGTACGTGATGTGCAAGTGTGAAGAG
CTGACGCCATCTCCACAATCCTCGCACCACCTGCACACACCCTTGTGAAA
CCTCCGTCCCCTCCTTTCTTACTGTTATCTCATTACTTCCCTTTTCCTCT
CCCTCGCGATCCCCCTTTCCCCCTTGCTCTTTTCCTATCACCTCCCCCCT
TTTTCTCTTTCCTTTTCCCTTATTTCTTTTTCCCCCCTTTTCTTTGTCCT
TCTCCCCTCCTTTTTTTCCCTCCCCCCTTTTCTTTTTCCCCCCTATTTTC
TTCTCCCTTCCTTTCTCTTTACTCTCCCCCCTCCTCTTCCTCCGCTCTCT
ATCCTCTTCACTCTTTTCCCCTTTTTTTTCCCCTCCTTCTCCTTTCATTC
CCCTCTTCCTCTTCCGTTTTTCCTTTTTCCCCTCTTTCTCCCCTTTCACC
TTTTCTTTTCACTTTCCCCCTCTCCCCCTTACCCTTTCCTTCTCCTCCCC
ACCCACTTTCTTCTT
TCGATGCTGTGNGTAGGCTGGGGGNCGCCTTTCAACAACTTTAGGTGAAC
TATAGATTCCCACACGCCACTCTTTCCCTAGGCTGTTTTTGCCAGGACCT
TTGTTGCAGGTTTGACAAAGTTTCTAAGGCTGTTACTACTGTTGCAGACA
GAACAGTGCTCCCTCTTTCCAGCCGTTCTGCTGAAGTCCTAACTCTACAG
ACTGTGAATGGTTGTTTTGGGCAACAAGGCAACAATTAAGGTAAAATGAG
GCCAGAGGGGCTGATCCAATAGCAATGGATGCCTTATAAAGTGAAGATGC
TCCAGGAAATTTGACTCNTTGTCCATATCCACACAAGCCAAGTTAGAACA
TGTATAATAAAGGTGGCCATCTTCAAGCCAGTGAGAGACTTCACAAACAC
TGAATTCTGGACACCGTGCTCTTGTATTTCCAGGACCTTAAGATAGAAGG
AATGTATTTCTGTCCTTTAAGCCACCAGCCTGGGGTATTTTGTTATGGGA
CCCCTGATATACTCACTACTGGTACACTCCTACCCCCCCCCACGATCCTC
ACTGCTTGATTCTCTTCTCTTTTTTTCTGACATCCTACCCCCCTCACCCC
TTTTCCCCTTTTTTCCCCCTTTTTTTCCCCTTTCCCCCTTCCTTTTCTCC
CTTCTCTTTCCCTCCCCCTTCCACCGCTCTAATTTTCTTTCCCCCCTCCT
ACCTCTTTTTTTCTTTACCTCCTTCTCCCCTCCGCCTTTTTTTCTTCCTT
TTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_l11.g1 MSMg01no469_l11.g1 CHROMAT_FILE:
MSMg01no469_l11.g1 PHD_FILE: MSMg01no469_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:23 2005
         (243 letters)



>mm_chr2_151605692_151606334
          Length = 643

 Score =  435 bits (225), Expect = e-126
 Identities = 240/247 (97%), Gaps = 4/247 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttccctaggctgtttttgccaggacctttgttgcaggtttgacaaagtttctaaggc 60
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 304 tctttccctaggctgtttttgccaggacctttgttgcagctttgagaaagtttctaaggc 245

                                                                       
Query: 61  tgttactactgttgcagacagaacagtgctccctctttccagccgttctgctgaagtcct 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 tgttactactgttgcagacagaacagtgctccctctttccagcccttctgctgaagtcct 185

                                                                       
Query: 121 aactctacagactgtgaatggttgttttgggcaacaaggcaacaattaaggtaaaatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aactctacagactgtgaatggttgttttgggcaacaaggcaacaattaaggtaaaatgag 125

                                                                       
Query: 181 gccagagg----ggctgatccaatagcaatggatgccttataaagtgaagatgctccagg 236
           ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gccagaggggctggctgatccaatagcaatggatgccttataaagtgaagatgctccagg 65

                  
Query: 237 aaatttg 243
           |||||||
Sbjct: 64  aaatttg 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)