BAC Information

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BAC

Clone NameMSMg01-469L12
Chromosome2 (Build37)
Map Location 85,242,795 - 85,242,934
singlet/doubletsinglet
Overlap genenone
Upstream geneTfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992
Downstream geneOlfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469L12.T7 (MSMg01no469_l12.b1)MSMg01-469L12.TJ (MSMg01no469_l12.g1)
ACCAG552888AG552889
length776815
length of high quality
(start - end)		---139 (76 - 214)
definitionCHROMAT_FILE: MSMg01no469_l12.b1 PHD_FILE: MSMg01no469_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:23 2005CHROMAT_FILE: MSMg01no469_l12.g1 PHD_FILE: MSMg01no469_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAAACTTTTCTTTGNNAAAANAGCNTTTTCAAAAAAGAGGGGGGGAGA
GCGTTTTCCAAAAAAAAACTAGTTGGGGACGAGGGACTAGACCTTCATCT
GGCTCCTTTATTCCCCTCTACTATGACTGCACCCTCCTCCAGCGATGTCA
CATGATCTCAACTGACCTTCATTACGTCCGCTCTCTCACTCTCTTGGCAT
CGGCTGACAAAAACAGGAAAAATCTCCATCAGACAGGTACCTTTTACCCA
GCCAAACCACCCCTGATTCCTTCCACCGACACCACAAGCTTTGCCCATAC
AGCAGGATTTTTTTTTTCCAGCCTTCCGGCTGTTTCTAGCGACACTTCTC
TTTCTTTAACCCTGCACTCTTACCAGCCGCCAAACATATCCCCCCTTTCA
TATCCTCTCCCCCAACCATGTATCTCCGATTATCACGTACCCCGTACTTT
CACTCTTACAGTAGCGCCCCCACTCGCTTGCAATTTTCTATTCCCCCATC
GAATGTCCTATTTCATTTCTCCTTATTACTATGCCCCCCAGTACCACACA
TGCCTGTTTTTCCCCCTCCCACCCCTTTTCTTCTTCTTCCTTTTTATCGT
CCCTCCGGCCCCGCTTTTCCCTTGTCACTTTTTCCTTAACCCCTCGTCTC
CTTCCCCCCTTTTACCTCTTTACCCCCTCTCTCCATCTCCCTTTACACCA
TTCACGCTTTGCCATCCTATTTTCTAATTCACCACATTTTTCCTATTTTT
CCTCTCCCCTCCCCTTCTTCTTGCTT

CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACACGCGACATTCTGTGTCCCAGTGAATGGCCCAAC
TCCTATAAACCATATGAGAGACCTACTGGATTTAGAAGGTTGTTTGGCTT
TGTATTGTATGTTTGTTTACTTGTTTTTAAGAAGGGGACATAAAGTTAGG
AGGGGAATATTTGGGTAGAATATACTGCTCATCGACACCCAGCCCTATTT
TTTTTTCCACCCTACACCCTCGTTGACCTCCTACCTTTGCTCTTCAACAG
CCCACCCACTCCCCTTTCCCTCACTTTTCCCCGCCCCGCCCCTTCTGCCC
CTTCCTTTTTTCTCTTCCCCCCTTTCTTTTGTTCCTTCATTTTCCCCTTT
TCCCTTCCGTCCTGCTATCCCCCCCTTTTTTTTTCCGCATTTTTTTCTTC
TCTCCCTTTCCTTCCTTCTTTTCTTTTTCCTCTCACTTTTTCTTTCTTCT
CTTCTCCTTTCCTTTCCCTTCTGTCTTTCTCTTTCTTTTTTCCTTTTTTC
TTTTTGCCCCTCCCCTTTCCTCCCCCTTTTTTTTTTTCTTCCCTCCCCCC
CCTTTTTTCCTTTTCCTCCCTCCTCTTTCCCCTTCTCCTCTCTCCCCCTT
TCTTTTTTCTTTCCCCCCCTTCTTCCCCCTTTTTTTTCCCCCTTTTTTTT
TTTTCTTTCCTCTACTTTTTTCTCTATATTTTTTCCCTCCCTTTCTTTTT
TTTTTCCCTCCCTCTTCCTTCTCCTTTTCCCCTTTTTTTCCTTCCTTTTC
TCCCCCCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_l12.g1 MSMg01no469_l12.g1 CHROMAT_FILE:
MSMg01no469_l12.g1 PHD_FILE: MSMg01no469_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:23 2005
         (139 letters)



>mm_chr2_85242595_85243134
          Length = 540

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgtcccagtgaatggcccaactcctataaac-catatgagagacctactggattta 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 340 tctgtgtcccagtgaatggcccaactcctataaacacatatgagagacctactggattta 281

                                                                       
Query: 60  gaaggttgtttggctttgtattgtatgtttgtttacttgtttttaagaaggggacataaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaaggttgtttggctttgtattgtatgtttgtttacttgtttttaagaaggggacataaa 221

                               
Query: 120 gttaggaggggaatatttgg 139
           ||||||||||||||||||||
Sbjct: 220 gttaggaggggaatatttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 540
Length adjustment: 8
Effective length of query: 131
Effective length of database: 532
Effective search space:    69692
Effective search space used:    69692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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