BAC Information

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BAC

Clone NameMSMg01-469O02
Chromosome2 (Build37)
Map Location 179,777,894 - 179,778,354
singlet/doubletsinglet
Overlap geneSs18l1
Upstream geneLOC100043168, LOC100039413, Cdh4, Taf4a, Lsm14b, Psma7
Downstream geneGtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469O02.T7 (MSMg01no469_o02.b1)MSMg01-469O02.TJ (MSMg01no469_o02.g1)
ACCAG553012AG553013
length918766
length of high quality
(start - end)
---463 (79 - 541)
definitionCHROMAT_FILE: MSMg01no469_o02.b1 PHD_FILE: MSMg01no469_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:36 2005CHROMAT_FILE: MSMg01no469_o02.g1 PHD_FILE: MSMg01no469_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTCCACCATC
CGCCGGAATTCAAACAGTGTTCAATACGCTCTGATGAAGGAGATGATCGG
TGATAATACATTCGAAGATACGAGATGATCGTGGCCACCCACGAATCGAT
GATGCCCGATGCTCCCCCCCCCCCCCCCTCTCCCCCCCTCCCCTCCCCGC
CCCCCCCCCCTCTTCTTTCCCCCCCCCCCCCCCCCCCCCCCTTCCCCTCC
CCCCTTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTCCCC
TCCCCGCCCCCCCCCCCCTCCCCTCCTCCCCCCCCCCCCCTCCCTCCCTT
TCGCCCCCCCCTCTCCCCCCCCCCCGTTCTCTTTTTTTTCCCCCCCCCCC
CCTTTTCCCCCCCCCCCCCCCTCCCTTTCCTCCCCCCCCTCCCTCCCCCT
CTTCCCCTCCCCCCTCCCTTCCTCTTTTTTTCCCCCCCCTCCCCCCCCCC
CCCCCCCCTCCTCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCTTCCC
CCCCCCCCCCTCCCCCCCCCCCCCCCCCCTCCCCTCCCACTTTCCCCCCT
CCCCCCCCCCCCCTTTCTCCCCCCCCCCCCCACCCCCTCCTTCTTCCCTC
CCCCCTCCCCCCTTCCCCCTCCTCCCCTTCCCCTCTCCCCCCCCCCCCCC
TCCCCCCCCCTTCTTCCCCCCCCCCTCCCCCCCCCCTTCTCCTCCCCCCC
CCCCCTCCCCTCCCATCCCCCTCCCCCCCCTCCTCGCCCTCTTCTCCCCC
CTTCTCTCCCCTCCCCCCCCCCTCCCCTCCTCCTCCCCTTCCTCCTCCCC
TCCCCTCCCCCCCCCCTCCCCCCCCCCTCCTTCCCTCTTCCCTCATTCCC
CCTCCCCTCTCCCCTCTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAAAGGAACCAGAATTAGG
AAAAGCCAGCGCGTAAGAAAGATGCCTGGAACCGCGAAGGCAAACAGTAA
GAAGCTAAAGTGTCCAAGCCAAAACTTAAAGCTTCCTTTTGTTAAAGACG
TCCACACACCCACGCAAACGCCTTCTCTGAGAAACTGGCCCAAACTAAAG
GATGAAACTGAGAGACTGCAGGACAAACCTGCGGTGTCTGAAGCCAGGGT
GCAGAAGGCGAGGCTCGCGGATACCCAGTGGCCTGAGCGGGGGCGGGGCT
GCGCTAGCCTCAAGTCCGCCGCGTGCTGCAAGCTCTGGACAGCGGTGCGG
GCTCTGGAAATGGCACGCACACTTTGGATGCGTTCCTTTGTGCAGGGCAC
CGCAGTACCTCACAAGAGCGGCCAGCTCGCCGCAGCGGCGCGCCTCCAGG
CTGCCTGCTCCCCCTTCTCCACTCGCCAAGCATCGCGCANAGGCGCGCGA
CCGTCGTTACCACGGCTGTCAGCATAGTGTGACAAGTCCCCGTCCCGGCT
GGAGGTGCTGTGGGCCCTGTNCGTCTCCCCTGGTTGCGGCCGGCGTCCGT
TTCTCTCCCTCATACTACCCTCAACTTTTCCCCTGCTCCCCCTATTCCTT
CTCCTTCTTTACCCCCCCCCCGCCTTTCCCCCCCTTCTTTCCTCCTTCTC
TTTTTCCCCCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_o02.g1 MSMg01no469_o02.g1 CHROMAT_FILE:
MSMg01no469_o02.g1 PHD_FILE: MSMg01no469_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:36 2005
         (463 letters)



>mm_chr2_179777694_179778556
          Length = 863

 Score =  868 bits (449), Expect = 0.0
 Identities = 458/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaaaggaaccagaattaggaaaagccagcgcgtaagaaagatgcctggaaccgcgaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 661 tgtaaaaggaaccagaattaggaaaagccatcgcgtaagaaagatgcctggaaccgcgaa 602

                                                                       
Query: 61  ggcaaacagtaagaagctaaagtgtccaagccaaaacttaaagcttccttttgttaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggcaaacagtaagaagctaaagtgtccaagccaaaacttaaagcttccttttgttaaaga 542

                                                                       
Query: 121 cgtccacacacccacgcaaacgccttctctgagaaactggcccaaactaaaggatgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cgtccacacacccacgcaaacgccttctctgagaaactggcccaaactaaaggatgaaac 482

                                                                       
Query: 181 tgagagactgcaggacaaacctgcggtgtctgaagccagggtgcagaaggcgaggctcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgagagactgcaggacaaacctgcggtgtctgaagccagggtgcagaaggcgaggctcgc 422

                                                                       
Query: 241 ggatacccagtggcctgagcgggggcggggctgcgctagcctcaagtccgccgcgtgctg 300
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 ggatacccagtggcccgagcgggggcggggctgcgctagcctcaagtccgccgcgtgcag 362

                                                                       
Query: 301 caagctctggacagcggtgcgggctctggaaatggcacgcacactttggatgcgttcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caagctctggacagcggtgcgggctctggaaatggcacgcacactttggatgcgttcctt 302

                                                                       
Query: 361 tgtgcagggcaccgcagtacctcacaagagcggccagctcgccgcagcggcgcgcctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgcagggcaccgcagtacctcacaagagcggccagctcgccgcagcggcgcgcctcca 242

                                                    
Query: 421 ggctgcctgctcccccttctccactcgccaagcatcgcgca 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggctgcctgctcccccttctccactcgccaagcatcgcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)