ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCGGAAT
TCAAGAATATTTCCAGAGACATTTTCACATATAACAGAGATAATATGTAC
AGTGAGTTACTGATTATAGCATCTCTTGATGTGGAAACTTCTATGAAATG
CTTTGAAGCATATTATTAAACTCAATCATGGAGAGTGCAATGAACTAACC
CCTTGCCAGTTTTTTAGTATCTATGTATATATGCTAGAATATTGCATTCA
TGAGAGTAATATCATATGTGTTTTTGTTTTTACCACATAACTCCTCTGAG
ATAGCTCCATGCTAGAGAGATTTCAAAGAGGAATTGAGTTGATTTTGTTT
GAATTCTAACACTCACAGCATGTGTATTATTGAATAGTCAAGGCTGAGAA
TTACAATTGTAGTTTGAGGGTTTTTTTTTCACTCTGGATGTGTGATTGTT
TATAAATCAAAGGGGACAAAGAAATGAAATTTGACACAGCCGTTTTCACC
ACCAACAAAAATTGTATGAACATGCTAGACACAGGCTTTGCAAGTAGCTA
CTGGGACTGTGAACAGCTCATGTTTAGTGGAACTTCCAACACTATTGTTT
CCTAAAACTGAATTCAAAGCCCATCATACCTGTAGTCTCTGCAGAATTAC
TGTTTTTTTTTCTTATCTTTCCATAATGCATTTAAACTAAAATAAGTTCT
TTACATGACTTTTTAAGCAATCAAGACTGACTTGGTGGCGCGGTACAAAT
TATATAATTTTCCTTTCC

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTTTGGAGTCCACCTTCTTGAGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATTCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTTGTTGACGGTGTCTTTTGCCTTGCAG
AAGCTTTGCAACTTAATGAGGTGCCATTTGTCTATTCTCAATCTTACTGC
ACAAGCCATTGCTGTTCTATTCAGGAACTTTTCCCCTGTACCCATATCTT
CTAGACTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTT
ATGTGGAGTTCCGTAATCGACTTAGATTTGAACTTAGTACAAGGAGATAG
AAATGGATCAATTTGCATTCTTCTACATGATAACCGCCAGTTGGTGCCAG
CACCATTTGTTGAAAATGATGTCTTTTTTTCCACTGGATGGTTTTATCTC
CCTTGTCATAGATCAAATGATCATAGGTGTGTGGGTTCATCTCTGGGTTC
TCAATCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCA
GTTTTTATCACAATTGCTCTGTACCACAGCCTTAGTCCCCGCATGAACGG
TCCTCCACAGGTCTTTTTTCTCTTTAGATAGTTCTCCGTCTTCTAGAATT
TCTGTTCTCCAAAGATTTTGTCA

Query= MSMg01no469_o17.b1 MSMg01no469_o17.b1 CHROMAT_FILE:
MSMg01no469_o17.b1 PHD_FILE: MSMg01no469_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:39 2005
         (562 letters)



>mm_chr2_41891889_41892852
          Length = 964

 Score = 1050 bits (543), Expect = 0.0
 Identities = 559/565 (98%), Gaps = 4/565 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttcacatataacagagataatatgtacagtgagttactgattatagcatctcttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 attttcacatataacagagataatatgtacagtgagttactgattatagcatctcttgat 705

                                                                       
Query: 61  gtggaaacttctatgaaatgctttgaagcatattattaaactcaatcatggagagtgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gtggaaacttctatgaaatgctttgaagcatattattaaactcaatcatggagagtgcaa 645

                                                                       
Query: 121 tgaactaaccccttgccagttttttagtatctatgtatatatgctagaatattgcattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgaactaaccccttgccagttttttagtatctatgtatatatgctagaatattgcattca 585

                                                                       
Query: 181 tgagagtaatatcatatgtgtttttgtttttaccacataactcctctgagatagctccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgagagtaatatcatatgtgtttttgtttttaccacataactcctctgagatagctccat 525

                                                                       
Query: 241 gctagagagatttcaaagaggaattgagttgattttgtttgaattctaacactcacagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gctagagagatttcaaagaggaattgagttgattttgtttgaattctaacactcacagca 465

                                                                       
Query: 301 tgtgtattattgaatagtcaaggctgagaattacaattgtagtttgaggg--tttttttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 464 tgtgtattattgaatagtcaaggctgagaattacaattgtagtttgagggtttttttttt 405

                                                                       
Query: 359 tcactctggatgtgtgattgtttataaatcaaaggggacaaagaaatgaaatttgacaca 418
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 404 tcactctggatgtgtgattgtttataaatcaaagggggcaaagaaatgaaatttgacaca 345

                                                                       
Query: 419 gccgttttcaccaccaacaaaaattgtatgaacatgctagacacaggctttgc-aagtag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 344 gccgttttcaccaccaacaaaaattgtatgaacatgctagacacaggctttgctaa-tag 286

                                                                       
Query: 478 ctactgggactgtgaacagctcatgtttagtggaacttccaacactattgtttcctaaaa 537
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctactgggactgtgaacagttcatgtttagtggaacttccaacactattgtttcctaaaa 226

                                    
Query: 538 ctgaattcaaagcccatcatacctg 562
           |||||||||||||||||||||||||
Sbjct: 225 ctgaattcaaagcccatcatacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space:   526608
Effective search space used:   526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)