BAC Information

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BAC

Clone NameMSMg01-470E15
Chromosome2 (Build37)
Map Location 36,876,037 - 36,876,355
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
Downstream geneOlfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E15.T7 (MSMg01no470_e15.b1)MSMg01-470E15.TJ (MSMg01no470_e15.g1)
ACCAG553326AG553327
length750758
length of high quality
(start - end)
---319 (330 - 648)
definitionCHROMAT_FILE: MSMg01no470_e15.b1 PHD_FILE: MSMg01no470_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:09 2005CHROMAT_FILE: MSMg01no470_e15.g1 PHD_FILE: MSMg01no470_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCACACATCCGCGGAA
TTCTCAACTGATGACCACTGAATGACTGAGAAGCACCTGAAAAAAAATGT
TCAACATTCTTAATCATCAGGGAAATGCAAATCAAAAAAAAAAACCCAAA
ACACTGAGCTTCCACCTCGGCGGAGTCAGAATGTCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGTGAGGATGGGAAGAAAGATGAACACTCCTCC
ATTGCTGGTGGGATTGCAAGCTTGTACAGCCACTCGGGAAATCAGTCTGG
TGATTCCTCAGAAAATTGTTTTTATTACTACCAGAGGGTCCAGCAATACC
TCTCCTGGACCTATTTCCCGAATATGGGCCAACTGGTAATAAGGACCCAT
GCTCCATTAAATTCATACAGGCCTTATTTATAATACCCAGAACCTGGAAA
GAACCCAGTTGTCTCTCAACAAAAGAATGGATACAGAACATGTGGCACAT
TTACCCATGCCCACTACTACTCCCCTATTANAACCCACAATCTCTGACAT
ACTTACGCACCATGGATGTCTCTGCACGACACCTTCCTGACCGAGGTACC
CCCATCCCCACCCCACTCCTACGATATGCACCTCCCTGACAAGCCGACAT
ACCTCCCCACATCCAAAACACCCCTTATACCCCTCCGCAAACCCCACCCC
CCCCACCACCAACACCCCGTGCACCATATCCCCTCTCCCCTCACTACGCG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCGCAACTCCATGACAGCCAGGGATACATAGTGAGAC
CTTGTTTAATCCCACATCCCAAATTCTCTCAGTTTTTCATCACAGAATCA
GTGAAAACATGTACATGAAGCAGCATTTTTATAAAATGTAGGGGTAGTAA
GAATGAAAAGTCTAAATAAAAAAAAACTAGAAAAAAACAAAGAAAATTAA
AGGTAGTCACACAGGCCATCACACTATGAGCTTCTCATTTAAGGTGAGAA
ATAATATGTTTTCATCCACCATTTTGTTCAGATATAAAATGAAAATATTC
TTGACTTGCAAAGACTGGAATGCCTGATGCACCTAATTTTATTATTTGGT
AACTTATTCAATACACACAGAAAAGTTGATGAAAATCAGGAACTTAAAAA
ATCTATCAAAACTTTGAAAAGGAAGAAAGATAGGTGACACACTGAAGAGG
AAGAGGTTTTATATTTTGTAGTAAACGGCCACACAAACAAGTGTATATTA
GCACAGTATTCAGAGACATGGAAGTTTTGAGCTGAAATATGTAACTGAAA
CTACAAGAAAGTAAGCAAGTTTAGGGCAATGACTATCCTTTTTATTACAC
ATGGCAGCATAGTTATACCCTATTATTATTTTGCGCGGCTTGCATGCATG
TACAGCAGATGTTTGTGTGACTGTATGTAGCATTATATCATCATTTCCCC
CCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e15.g1 MSMg01no470_e15.g1 CHROMAT_FILE:
MSMg01no470_e15.g1 PHD_FILE: MSMg01no470_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:09 2005
         (319 letters)



>mm_chr2_36875837_36876555
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatataaaatgaaaatattcttgacttgcaaagactggaatgcctgatgcacctaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agatataaaatgaaaatattcttgacttgcaaagactggaatgcctgatgcacctaattt 460

                                                                       
Query: 61  tattatttggtaacttattcaatacacacagaaaagttgatgaaaatcaggaacttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tattatttggtaacttattcaatacacacagaaaagttgatgaaaatcaggaacttaaaa 400

                                                                       
Query: 121 aatctatcaaaactttgaaaaggaagaaagataggtgacacactgaagaggaagaggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aatctatcaaaactttgaaaaggaagaaagataggtgacacactgaagaggaagaggttt 340

                                                                       
Query: 181 tatattttgtagtaaacggccacacaaacaagtgtatattagcacagtattcagagacat 240
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 339 tatattttgtagtaaatggccacacaaacacgtgtatattagcacagtattcagagacat 280

                                                                       
Query: 241 ggaagttttgagctgaaatatgtaactgaaactacaagaaagtaagcaagtttagggcaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 279 ggaagttttgagctgaaatatgtaactgaaactacaagaaagtaagcaagtttaaggcaa 220

                              
Query: 301 tgactatcctttttattac 319
           |||||||||||||||||||
Sbjct: 219 tgactatcctttttattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)