BAC Information

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BAC

Clone NameMSMg01-470I13
Chromosome2 (Build37)
Map Location 32,644,637 - 32,644,788
singlet/doubletsinglet
Overlap geneStxbp1
Upstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik
Downstream gene9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470I13.T7 (MSMg01no470_i13.b1)MSMg01-470I13.TJ (MSMg01no470_i13.g1)
ACCAG553514AG553515
length769843
length of high quality
(start - end)
31 (184 - 214)152 (74 - 225)
definitionCHROMAT_FILE: MSMg01no470_i13.b1 PHD_FILE: MSMg01no470_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:29 2005CHROMAT_FILE: MSMg01no470_i13.g1 PHD_FILE: MSMg01no470_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATTCTCCGGCGCCAAANNGANNCCCCNATTGCGCACCCGCCCGGAAGN
NNANNAGATTATCGNTACCCGCTTATANNNNAGNAGNACNANAACNAAGG
AGCCGGGGAAAGGTTTTAGACCTTCACCCTTTCCCTTCAGAACCTATGTC
CCGGCTGTATGAGAGGGGGGGGCACAGCAGCCTAGGCGCACACTACTTCC
CAGCAGGAGGGCGTGCCCCTGGTCCTGGCTACCGGAGTTACGCATGTTTT
TCTCCTGCCTAGAGTTTATCCATTGACTCCGTTTCCAGATGGCCTGTTGN
AGGGGCGCTTTTTTTATCTTTTGCCCACCCAGCCCGCCAGGAGCAACCCC
CGAATTTTGTCTCATGCCCTCCTCGCCGGGGCGGACTCTGCCATCTGTCT
CCCTCCTGCGCAGCCGACCCTTAGTGTTAGAGGCCTGGCAGCCTTGACGC
CCTGCTTCACCCCGACCTGCTCCCTCCTAACACCCAGAAGAGCCCCCGCC
CCGCGCCCCACCCCTATTCTCCCCCCCCCCCGTCCACACGCCGCCCCGCA
TTCCCCCTTCCCCCGCGCATTCTCTCCCCCCCCCCCCCCCCCCCTCCCAC
TCCTCCACCCCCCCCCCCCCCCCCCGCCCCCCAAAATCCAACCCCCCTTT
TTTTTTCTCTCCCCCCCTCCCCAATCCGCCCCTCCTCCTTCCTTCCCTTC
TCCCGGTTCCCCCCCCCTCCCTTTCCTCCCCCTTTTCCCCTCTTCCCCCT
TCCCCCCTTCCTCTTCCCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTTATTTATGACCCCGTGACCTGT
ATATAGCCCTGTCCCGCGTGTGCACATTGCTTGAATATGGAAAGGTAGAT
GTGTGGGTGTCTCTCCAAGCTTGGTTGGACTCATTTCTGTCCTTGTTGGT
GTTTGTTCCCCGGATAGGACATGCTGACGTAGTGATGTTCTCCTCGCTAG
TCCCTGCTCGCTCCCTGCTCTCAGCGATTATCAGACACCTCTGGACGTTG
GTGTGGAACCAGCCTCCTTTTTTCTCCTGTGGCCCACGCTTACGCTGTCC
CCACCATTTCTGTCCGACTTCCTTCCCTCGCGGTCTCCCCACTCTGTTCC
TTCTTTCCTTCCACCCCCCCCCCTTCTGCTGCCCCTTCTTCTATCCCTTC
CTCCTCTACCCCCCCTTCTTTTTTTTTCCCCCTTTCCTCCTCCCCCCTCT
CCCCCTTTTCCCCCTCTTTCCTCTCCTCCTTTTTTTTTTTCCCCTTTTCC
CCCCTTTCCCTCCCCTCCCCCCTTTTTACCTCTTCCTCTTTCCCCTCTCT
TTCCTCTCTCCCCTCCCTTTTCTCTTTCCCCTCCTTTTTCCTTCTTCTTC
TCTCCTCTCCCCTTTTTTCTCTTTCTTCTCCCCTCCTCCCCTCTCTTTCT
TCTTTCCTCCTTCCTCCCTTTTCTTTCTCTTTTTTCTCCCTCTCTTTCTC
TCCCCCTTTTTTTCCCCTCTTCCTCTTCTCTCTCTCTCCCCTCTCTTTTT
CTTCTCTTCCTCCTTTTTTCTCCTCTTTCCCCCTTCTTTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_i13.g1 MSMg01no470_i13.g1 CHROMAT_FILE:
MSMg01no470_i13.g1 PHD_FILE: MSMg01no470_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:29 2005
         (152 letters)



>mm_chr2_32644437_32644988
          Length = 552

 Score =  286 bits (148), Expect = 3e-82
 Identities = 151/152 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccttatttatgaccccgtgacctgtatatagccctgtcccgcgtgtgcacattgcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tcccttatttatgaccccgtgacctgtatatagccctgtcccgcgtgtgcacattgcttg 293

                                                                       
Query: 61  aatatggaaaggtagatgtgtgggtgtctctccaagcttggttggactcatttctgtcct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 292 aatatggaaaggtagatgtgtgggtgtctctccaagcttggttggattcatttctgtcct 233

                                           
Query: 121 tgttggtgtttgttccccggataggacatgct 152
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgttggtgtttgttccccggataggacatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)