BAC Information

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BAC

Clone NameMSMg01-470K12
Chromosome2 (Build37)
Map Location 99,882,434 - 99,882,681
singlet/doubletsinglet
Overlap geneLOC668702
Upstream geneLOC621386
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K12.T7 (MSMg01no470_k12.b1)MSMg01-470K12.TJ (MSMg01no470_k12.g1)
ACCAG553608AG553609
length760747
length of high quality
(start - end)
228 (77 - 304)248 (329 - 576)
definitionCHROMAT_FILE: MSMg01no470_k12.b1 PHD_FILE: MSMg01no470_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:38 2005CHROMAT_FILE: MSMg01no470_k12.g1 PHD_FILE: MSMg01no470_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCACAACACCGCGGAAT
TCTTTGAGTTTCCTTGAATCCAGCAACACTGCTTTAGGAGTTTATGACCT
GTAGAAATTCTCTGGTAGAATTTTTGGGGTTGCTTATATATGCAATCATA
TCATCTGCAAATAGTGATATGTTGACTTCTTCCCTTACAATTTATATTCC
CTGATGTTCTTTAGTTGTCTCATTGCTCAGGCTAGAACTTCAAAGTACTA
TATTGAATGGGTAGATAGTAAGCAGCCTTGTCCCTGATTGTATTGAGATT
GCTTCATGCTTCTCTCTGTTTATTTTGATATTGGCTTTTGGCCTACTATA
TATTGATTTGACTATGTTTATGTATGTGTCCCTGATTTCTCTAATACTTT
CAATGTGAAGCGCCGTCTTGTTTTTATCAAAGGTTTTTTTCAGCGTCTAC
TGAGATAATCATGTGATTCTTCTCTTTGTTTGCCTATATGGCGCATTATC
TTGATGCATCCCTCCACCTCCACTCTTCCCCCGCTCTTCCCCTCCTCCCC
CTTCTTCTCTCTCCCGTCCCTACCTTTTTCCCCCCCCCTTCCCCCTTTCC
CCTTCTCCCTCTTTCTCTCTTCCCTTTTCCGCCTTCCTCCCTTCTATCCC
CCTCTCTTTTTTTCTTCCCCCCTCTTTTTCCTCCCTCTCTTTCCCCCTAC
ACCCCCCCCCCTCCTTCTACTCTCATTTTCTTCGACTTTCCCTCTTTTCC
CCCCTCCCCG
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCTGGTATTTTATTAATTGTTGC
AGCTGTTTATGGTAAATAATTTACTTTATATTTAACATCACTAGTGCCCT
GGGATTATTAAAGTTAAAGATGCAATTAAAGACAATAATAACAATAAAAG
CATAATTGCTAGAATCAGAAAAGATATCAGCAAGCTCTTATAATATTGCA
TCTTTCAGGACTCCCTAGTGTCTTTCCATATGTACATTTTCTTCAACTGG
GAGTCAATATGTCAGTTTATCNTTTTATACTTGAATTGAAAATATAAACT
ATACAAAAGCATACTTAGGTGCCAATTAATTACCCACAGATAGATATTTA
ATATATTGAGTATTATTATACTGTTATTCATTCTTAGTATAGTGTAAAGA
ACTTTCTATGCCATTCGATACAGGCTTTACAGAGAAGATTATTACCAAAA
TAAACTTCATCTTGAATGAACTTACAGGTTGTATGCTAGTTTTGTTAAGT
ACTTTTTATTATTCTAATTTTAATTGGCATAAGCTGTACCAATCCGGTGT
ACACAAACACATTATGTATTCTTCAAATCTTCACAAGTATATCTGTCCCC
TACAAGATTTACTTATCTCTTTTCAGTTAAAATCTCTAATAATATTTTTA
TGACTTCATGTCTATTCTCTTTAGGGCCTTATCGATATCGAAAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k12.g1 MSMg01no470_k12.g1 CHROMAT_FILE:
MSMg01no470_k12.g1 PHD_FILE: MSMg01no470_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:38 2005
         (248 letters)



>mm_chr2_99882234_99882881
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgaattgaaaatataaactatacaaaagcatacttaggtgccaattaattacccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acttgaattgaaaatataaactatacaaaagcatacttaggtgccaattaattacccaca 389

                                                                       
Query: 61  gatagatatttaatatattgagtattattatactgttattcattcttagtatagtgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gatagatatttaatatattgagtattattatactgttattcattcttagtatagtgtaaa 329

                                                                       
Query: 121 gaactttctatgccattcgatacaggctttacagagaagattattaccaaaataaacttc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaattttctatgccattcgatacaggctttacagagaagattattaccaaaataaacttc 269

                                                                       
Query: 181 atcttgaatgaacttacaggttgtatgctagttttgttaagtactttttattattctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcttgaatgaacttacaggttgtatgctagttttgttaagtactttttattattctaat 209

                   
Query: 241 tttaattg 248
           ||||||||
Sbjct: 208 tttaattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)