BAC Information

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BAC

Clone NameMSMg01-470P20
Chromosome2 (Build37)
Map Location 45,039,197 - 45,224,927
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470P20.T7 (MSMg01no470_p20.b1)MSMg01-470P20.TJ (MSMg01no470_p20.g1)
ACCAG553862AG553863
length772770
length of high quality
(start - end)
248 (67 - 314)442 (71 - 512)
definitionCHROMAT_FILE: MSMg01no470_p20.b1 PHD_FILE: MSMg01no470_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:05 2005CHROMAT_FILE: MSMg01no470_p20.g1 PHD_FILE: MSMg01no470_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,224,680 - 45,224,927)(45,039,197 - 45,039,638)
sequence
AATTTGCGGCGCTAAACGACTCCTATTTTCACAACACCGCGGAATTCACC
TCTTATTCCAAAAACACATTGGGAAATTAATTCCCAGTGCTAAGACAAAT
CTGGCAGGAGAACAGACACATTGCAATTTTCCAAGTTACCTGGCAATCGT
TTCGAAATGTTATCTTGTGTAAAATGGCACTCTTGTGTCTTCCCCCACAG
ACATAGGCTGTTTGATTTCTGGTCTTTATTTTTTACTAAGTTAGAGAATG
TATATCCATTTTGATGCTGTCATAAAAGCATACCAGTTATCTGTCAGAAA
CATTTATATAGATGTACATACATAATTTCACATAACAATACTAATTTTAA
TTATGATTAAGTAAAATGCAATTAAAATTAAACCTTAGAAATAAATACAT
TAGAGATAAAGCTTGTTGTTATTGTACGATTATTATTGTATCTTATAATG
GAAAATAGCTACAAAATAATAATCACAAACAGGACTACAATGAACTAATG
TACTTTAAAACACAAATTTCTAGATTTATATATCAGAACCTAGGAGTGTC
CACTTAAACCACATCCAAATTTAAGTCTTTGTCAGGCCACTTACTGAGCA
TGTGTTAGCTCTGCGCTAAAACTGTAACTCTACTCAGCCACGCAAGCTAA
CCTCCCTACCTTTGTTTACTTTGCACACCTTGACTCCACTCCCAATATGC
CCCATTATGTCCCCCACCTTTTTAATGCTCGAACACTGCACCCACAAGCA
CTCCCCCGTTTCCTCCCCCCTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGTGAGTGAATTAATTTCCACTCTAGCT
TCCCCTAAGAAACAAAGTACCTAGTTTCTTTAAAAGAGGATGTCCGGCAT
TATTTGGAAAAGGATGCTTTTGACTGTTAGCCTGTCCTTATTTTTACTGC
AAGTGTGAAAACATTTCATATAGCAGGGTTGCTATGTGCCTGATGGTCCC
AGCTTCTGAACACTTTGACCTCATTCATTTGGTTCTTTAAAATGAAATGT
TTCTTTGCCCATTTTTTTTCTGTCTCAGCTCTCTCTCTTATTTTTGAATC
TACGTACGCTTTAGGATTTGCTAGAAGAACAAAATAAATTTTGAACAAAG
GGGAGGGAGGATGAAACCGAAGGAAGTTGTGAAAAATAGCCCCTTCTTTC
CAAACTGATTTAGAAGGGCTGTGATTAGTCCTGTTCTGCTGGAGGCGACT
TCGGTTTTCATTCAGTGGCTCCAGTTCGTTTGTACCTGATGTCACTGGTG
CTGAGGTCAAGGGCTTGACTTCCCAGTCGCTGCTGCCCCTTTTCCCAGAG
CATATGGAGCGCTAATACGATCACTGCAGAGCAATGCCGGTCCTCCCAGG
TACCATGTTCACTCCCGCTCCAAACCGCACATCCCTACCCTACTCTCCCC
CCTCCCTTACCCTAGTATCGCAAAGTGCCCTCTTTTAATCTGCCAGCTTC
CCCCACTCCGTGGCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_p20.b1 MSMg01no470_p20.b1 CHROMAT_FILE:
MSMg01no470_p20.b1 PHD_FILE: MSMg01no470_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:05 2005
         (248 letters)



>mm_chr2_45224480_45225127
          Length = 648

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgggaaattaattcccagtgctaagacaaatctggcaggagaacagacacattgcaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 cattgggaaattaattcccagtgctaagacaaatttggcaggagaacagacacattgcaa 389

                                                                       
Query: 61  ttttccaagttacctggcaatcgtttcgaaatgttatcttgtgtaaaatggcactcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttttccaagttacctggcaatcgtttcgaaatgttatcttgtgtaaaatggcactcttgt 329

                                                                       
Query: 121 gtcttcccccacagacataggctgtttgatttctggtctttattttttactaagttagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtcttcccccacagacataggctgtttgatttctggtctttattttttactaagttagag 269

                                                                       
Query: 181 aatgtatatccattttgatgctgtcataaaagcataccagttatctgtcagaaacattta 240
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaggcatatccattttgatgctgtcataaaagcataccagttatctgtcagaaacattta 209

                   
Query: 241 tatagatg 248
           ||||||||
Sbjct: 208 tatagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no470_p20.g1 MSMg01no470_p20.g1 CHROMAT_FILE:
MSMg01no470_p20.g1 PHD_FILE: MSMg01no470_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:05 2005
         (442 letters)



>mm_chr2_45038997_45039838
          Length = 842

 Score =  847 bits (438), Expect = 0.0
 Identities = 441/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgagtgaattaatttccactctagcttcccctaagaaacaaagtacctagtttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgagtgaattaatttccactctagcttcccctaagaaacaaagtacctagtttctt 260

                                                                       
Query: 61  taaaagaggatgtccggcattatttggaaaaggatgcttttgactgttagcctgtcctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaagaggatgtccggcattatttggaaaaggatgcttttgactgttagcctgtcctta 320

                                                                       
Query: 121 tttttactgcaagtgtgaaaacatttcatatagcagggttgctatgtgcctgatggtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttactgcaagtgtgaaaacatttcatatagcagggttgctatgtgcctgatggtccc 380

                                                                       
Query: 181 agcttctgaacactttgacctcattcatttggttctttaaaatgaaatgtttctttgccc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttctgaacactttgacctcactcatttggttctttaaaatgaaatgtttctttgccc 440

                                                                       
Query: 241 attttttttctgtctcagctctctctcttatttttgaatctacgtacgctttaggatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttttttctgtctcagctctctctcttatttttgaatctacgtacgctttaggatttg 500

                                                                       
Query: 301 ctagaagaacaaaataaattttgaacaaaggggagggaggatgaaaccgaaggaagttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagaagaacaaaataaattttgaacaaaggggagggaggatgaaaccgaaggaagttgt 560

                                                                       
Query: 361 gaaaaatagccccttctttccaaactgatttagaagggctgtgattagtcctgttctgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaaatagccccttctttccaaactgatttagaagggctgtgattagtcctgttctgct 620

                                 
Query: 421 ggaggcgacttcggttttcatt 442
           ||||||||||||||||||||||
Sbjct: 621 ggaggcgacttcggttttcatt 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)