Query= MSMg01no471_b05.b1 MSMg01no471_b05.b1 CHROMAT_FILE:
MSMg01no471_b05.b1 PHD_FILE: MSMg01no471_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:11 2005
(646 letters)
>mm_chr2_61600326_61601371
Length = 1046
Score = 1241 bits (642), Expect = 0.0
Identities = 645/646 (99%)
Strand = Plus / Minus
Query: 1 catccttggaaaataagatgtgctctgttgcaagcctaagaatatcttttgggggttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 catccttggaaaataagatgtgctctgttgcaagcctaagaatatcttttgggggttttg 787
Query: 61 ttttcaataaagagaaggtgacgagagaaaaggaagaggactggaggaggggtagggtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttttcaataaagagaaggtgacgagagaaaaggaagaggactggaggaggggtagggtgc 727
Query: 121 agggagaaagtagagggggtgactatgcagacgtattctttacagaagagcctcttgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agggagaaagtagagggggtgactatgcagacgtattctttacagaagagcctcttgact 667
Query: 181 cgagccagaagaaatactttctgattctactacacagagtgaatataagaatcaaaatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgagccagaagaaatactttctgattctactacacagagtgaatataagaatcaaaatag 607
Query: 241 cctatctcacatcatcaagcaagcatttacatggaggcctagtgataatgtattatcttc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cctatctcacatcttcaagcaagcatttacatggaggcctagtgataatgtattatcttc 547
Query: 301 attttctacatagggactacctataacagaaataagttaatttttatgtatttatatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 attttctacatagggactacctataacagaaataagttaatttttatgtatttatatatt 487
Query: 361 ctgatagaaaaagaagatacaacagcagactaagattaaaatctaaatctaaatttgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgatagaaaaagaagatacaacagcagactaagattaaaatctaaatctaaatttgtgg 427
Query: 421 ttaacatagcatatccatatgaacaaaaagtataatggatattcagaaagacaaaacaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttaacatagcatatccatatgaacaaaaagtataatggatattcagaaagacaaaacaat 367
Query: 481 tccaaatcaatttacgaaagcaaaacaaaaacttacttacctcatctagaagtattgtag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tccaaatcaatttacgaaagcaaaacaaaaacttacttacctcatctagaagtattgtag 307
Query: 541 attttcatattgttttgtattatttgcagatatgttgcatactatagcagctgctctgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 attttcatattgttttgtattatttgcagatatgttgcatactatagcagctgctctgca 247
Query: 601 gaaaacacttgtttcatgtgtgtgttatgtatgtatatatacatac 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaaaacacttgtttcatgtgtgtgttatgtatgtatatatacatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b05.g1 MSMg01no471_b05.g1 CHROMAT_FILE:
MSMg01no471_b05.g1 PHD_FILE: MSMg01no471_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:12 2005
(643 letters)
>mm_chr2_61454390_61455432
Length = 1043
Score = 1131 bits (585), Expect = 0.0
Identities = 623/645 (96%), Gaps = 16/645 (2%)
Strand = Plus / Plus
Query: 1 aaaacaagaagctgaagtagcagttatgggtgaattaaatgatctaaaatttctttagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacaagaagctgaagtagcagttatgggtgaattaaatgatctaaaatttctttagta 260
Query: 61 tctaatactgaaagcaagtggcacctgaatgtaggtcacttatgaagatgatggtaatag 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaatactgaaagcaagtggcacttgaatgtaggtcacttatgaagatgatggtaatag 320
Query: 121 actctagaatgactttataatgactactttaatgctgataactgaaatcaagagtggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctagaatgactttataatgactactttaatgctgataactgaaatcaagagtggtga 380
Query: 181 ggaaggtagagtttgggtatgaagaaataagataccataatttggttctatgattaggtt 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 agaaggtagagtttgggtatgaagaaataagataccataatttagttctatgattaggtt 440
Query: 241 tagacctgtggaacatgtggaggaccatataatgaataggtataagttcagttctgtaga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagacctgtggaacatgtggaggaccatataatgaataggtataagttcagttctgtagg 500
Query: 301 cctacaaggagttctgtgttgaagactgtggtggtttaaataagaagccccccc--cccg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 cctacaaggagttctgtgttgaagactgtggtggtttaaataagaagcccccccacccca 560
Query: 359 cccaaacacacacacacacacacacacacacacacacacacacacacacacacacaagct 418
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 cccaaacacacacacacacacacacacacacacacacacaca--------------agct 606
Query: 419 catttatttgaatgcttagttaccagggagtaggactatttgaaaggattagaaggatta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catttatttgaatgcttagttaccagggagtaggactatttgaaaggattagaaggatta 666
Query: 479 ataggtatgaccttgttagctttaagattttagtacagagacccatttatcctaactgca 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 667 ataggtatgaccttgttagctttgagattttagtacagagacccatttatcctaactgca 726
Query: 539 catagatatttttttcttttgccactctattccctaacagtcttcctactatacatgtct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 catagatatttttttcttttgccactctattccctaacagtcttcctactatacatgtct 786
Query: 599 tctgaaatttttcaaatcatattctttctttagggcctttacaat 643
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tctgaaatttttcaaatcatattctttctttagggcctttacaat 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
