Query= MSMg01no471_b22.b1 MSMg01no471_b22.b1 CHROMAT_FILE:
MSMg01no471_b22.b1 PHD_FILE: MSMg01no471_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:15 2005
(651 letters)
>mm_chr2_141112450_141113497
Length = 1048
Score = 1183 bits (612), Expect = 0.0
Identities = 640/656 (97%), Gaps = 13/656 (1%)
Strand = Plus / Minus
Query: 5 gaattccctgctcctac-cttcaaacctaaaaggcccattgtaccttccccattctcagc 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattccctgctccaacacttcaaacctaaaaggcccattgtaccttccccattctcagc 697
Query: 64 ctccattgctataaccccaaggaaatgacaattaactgtctaatcagctgtaaagctaag 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctccattgctataaccctaaggaaatgacaattaactgtctaatcagctgtaaagctaag 637
Query: 124 tggaaatcatcttcccagaaggtgataacaacatactagtcactaagttattagaagtca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tggaaatcatcttcccagaaggtgataacaacatactagtcactaagttattagaagtca 577
Query: 184 ttcactacatatgtcagataccctgttctctacattttaagacctgtctccctgatcaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttcactacatatgtcagataccctgttctctacattttaagacctgtctccctgatcaga 517
Query: 244 aagtcattgctgccaccaaactggaccattctcgttatctgtattgaaggatttttgttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagtcattgctgccaccaaactggaccattctcgttatctgtattgaaggatttttgttt 457
Query: 304 ggcaaaagcccaaatttgtatatgcatgcataaacgtctgtgagtatgtgattgagatta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggcaaaagcccaaatttgtatatgcatgcataaacgtctgtgagtatgtgattgagatta 397
Query: 364 cagtacagcttctccaaaggacggaatttggagctgatgctaaaaatatagaatgaacga 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 396 cagtacagcttctccaaaggacggaatttggagctgatgctaaaaatatagaat----ga 341
Query: 424 acacctgaagttccccaggctacaggagaagaacgagtatcccagcaatccaaatcacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acacctgaagttccccaggctacaggagaagaacgagtatcccagcaatccaaatcacat 281
Query: 484 ttgagaaagtcaaaggtggggagcagcagtgatttaatgtttccaagagtgaagctactg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttgagaaagtcaaaggtggggagcagcagtgatttaatgtttccaagagtgaagctactg 221
Query: 544 caggaagaaatagaacgagagagagagagagagagagagagagagagagagagaggcaaa 603
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 caggaagaaatagaacaagagagagagagagagagagagagagagagagagagaggcaaa 161
Query: 604 gagagagacagagagacagagagg--------gagacagagagagaaagacagaga 651
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 160 gagagagacagagagacagagagggagacagagagacagagagagaaagacagaga 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1048
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1038
Effective search space: 665358
Effective search space used: 665358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b22.g1 MSMg01no471_b22.g1 CHROMAT_FILE:
MSMg01no471_b22.g1 PHD_FILE: MSMg01no471_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:15 2005
(688 letters)
>mm_chr2_140904844_140905932
Length = 1089
Score = 1237 bits (640), Expect = 0.0
Identities = 677/694 (97%), Gaps = 9/694 (1%)
Strand = Plus / Plus
Query: 1 tctgtagaagaggtgtcagttgagagatcactcacctgtctattaggaaggcatcctgat 60
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 201 tctgtagaagagatgtcagttgagagatcactcacctgtctattaggacggcatcctcat 260
Query: 61 gtta-ttaattgtcagtacaacctgggcttcttgagtctagatgtaccaagagggtctgg 119
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gttaattaattgtcagtacaacctgggcttcttgaatctagatgtaccaagagggtctgg 320
Query: 120 attctgtttggtaaatgttctttgagctactaaatgctagaaattataagctgtaaaaca 179
|||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 321 attccgtttggtaaatgttctttgtgctactaaatgctaaaaattataagctgtaaaaca 380
Query: 180 tttagttgtaggaaggtaggaaggtcaccttaatgcacacatatgtctattattaagaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagttgtaggaaggtaggaaggtcaccttaatgcacacatatgtctattattaagaca 440
Query: 240 agtagggcatcgagggcatcagaaaactgttaattcaaataaagcaaagatacttagtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagggcatcgagggcatcagaaaactgttaattcaaataaagcaaagatacttagtta 500
Query: 300 cctagcataaggccagaatctagtatgcatttatattagattaagaagcgtttctcctgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctagcataaggccagaatctagtatgcatttatattagattaagaagcgtttctcctgg 560
Query: 360 gttaacattgcatcagttgtccaacacaggttccaaactagttaataccattttgaggtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaacattgcatcagttgtccaacacaggttccaaactagttaataccattttgaggtg 620
Query: 420 aattagtttcaaaaatcttgagatgagagatctttgtctctctgcattgagtaggctatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattagtttcaaaaatcttgagatgagagatctttgtctctctgcattgagtaggctatg 680
Query: 480 gttgagaggcagggggca--------attgctattaaaaataatcagcatgtctattctc 531
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgagaggcggggggcaggaggggaattgctattaaaaataatcagcatgtctattctc 740
Query: 532 tatggatctctagaataacagaaaagaatcattcattcattcattgtctagttatcatct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatggatctctagaataacagaaaagaatcattcattcattcattgtctagttatcatct 800
Query: 592 atctataatctatgtatccatctacctgtataaatatgctatatttattcactacatata 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atctataatctatgtatccatctacctgtataaatatgctatatttattcactacatata 860
Query: 652 tgtatttgtatatcatctatttattcatctatat 685
||||||||||||||||||||||||||||||||||
Sbjct: 861 tgtatttgtatatcatctatttattcatctatat 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1089
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1079
Effective search space: 731562
Effective search space used: 731562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
