BAC Information

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BAC

Clone NameMSMg01-471D12
Chromosome2 (Build37)
Map Location 115,650,144 - 115,650,778
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043222, LOC100043232, LOC100043236, BC052040
Downstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471D12.T7 (MSMg01no471_d12.b1)MSMg01-471D12.TJ (MSMg01no471_d12.g1)
ACCAG554038AG554039
length1,322755
length of high quality
(start - end)		---635 (76 - 710)
definitionCHROMAT_FILE: MSMg01no471_d12.b1 PHD_FILE: MSMg01no471_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:24 2005CHROMAT_FILE: MSMg01no471_d12.g1 PHD_FILE: MSMg01no471_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCGCTCGTCCTCTATTCGCGCGCGGTGTTCAGGTGTTAGAAACGTAT
CTCATATTTTTAGTTGTTCAGGTGGTTCGCTCGGCTGTATCGTTTCCTTT
ATTATAGGATTAGCCGAAGCAGACATGCAAAGGCGTATTTACCACTAATG
ACCATGGCTCCCTCTGTGTTATTCAGTTTACTTCGCTTCTTTATCCGCGC
AGTTACGTCACTACATTATAACGCGCGTTCGTCTTACGAGCCGTGACAGG
AACAATTAAGGAGCATATATATTAGATCCGATATAACAACCATTAGCGCC
GGGGCAGCGTAGCGAGATGCGCGTGATACAACACCCATATAACAAGACAA
ATATTAGACAAACATAACAAAGAGCGCCGATAACGAGGGTAACACACCGA
TCTAGCTGGTGTGTGCGAATATGCTATGTGAATAATATACCGCGAGTCGA
GGCGTGCACATCGCCGCTTATGATGTGTTGTGGCGAGATATTGTCCGCAG
CGCGGCGATATTCCCATAACTCTCGTGGATTCTCCTTTTACTGGCCGATC
TTATATGACGCGTGTGAATATATCGCACCTCCACCCTGGACCTTAATTTA
GTGGGCACGCTAACAGAGGCGCTGGCTGTTGGTTGCACCGACATGGAACA
GATGTTATATAATTACTACAATTATAGTGAGTAGAGTGCATAAGACCGGC
ATGGCACGTTTGTGTGCGGTATAATTATATATGAACGAGTCGACCTGTAT
CAGGACGCCGCGGTGCGCGTGGCCTAACATAGGGGTGTCTATTATGCACC
GCACATATTCTATCATGAGTGTGCAGACGTTCACTCTCGATATTGCTGTG
TACGTCACACCATTATCATTGTGTCTGCGGCCCGACACTACACGTTCGAG
ATGTAGTATGTATCTATCTAGGCACAGCCCGCTAAGATGAGTNGAGACTT
GTAGAGGCAGAGAGAACCGAGTCGTCGCGTCGGTGCTGCGGCATATTTCG
ATCAGTTATATGCGCGAAGTAATAAGATCAACAGAGGCGCGTGAGCGGCG
CACACAGATGAGCGATTAGTGCACGTGGTGCTACGTGAGACGACAACAAC
GTAAGCGTGACATAAAGAATAATAGACAGCGCGGAAAGACAACACGGTTA
TACCGGTCATCGTATATATTCGCTTATATGCACAGCCGCACACGATTTGT
GTCGGGCGCGCGACGCCATAAACGCGCAATGGCTTACACACTAACAGTCA
CACCGTCAATCCCGCGCATCACCGNACATAACACGACGCTTCACGACGCA
TACACCACGATTCATCAACGAC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATGTTTTTGCAAAAGACCAGAG
TTCGGTTCCAGTCACTCTTATGTGATTCGCAACTACCTGCAACTCCAATT
CCAGAAGATTCAATAATGCCTTCTTCTGGCTTTTACCCTCATAAGTGCAA
TCCCATACATATACAAATAACTAAAAAATAAAAATAACATCTTTAAAAAA
GAGAGAGATGCCTAAACCTGTAACCCCAGTGTGTGGTAGGTAGAGACAAG
GGGAACACTGGGACTTACTGACTGCCAGCCAGGTTGAGTGAGACATTCTG
TCTCAAAGGAATGAGATTTTAGAGAGTTAGAATAGGAAACCAAATGTCCT
TCTCTGGTTCAGTGGATATGTACATGGGTGTGTACTTTCATACACACATG
TTTACATAAACCATACCCTCATACAAATATACACACACAGAAGAGATTTC
TCCTTTAAGAAGTCAGCCTCAGCCGAGCAGTGGTGGCGCACACTTTTAAT
CCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGCACGAGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC
TGTCTCGAANAACCAAAAAAAAAAAAAACCAAAAAAAAAAAAAAGTCATC
CTCTTACTGTGAGTATGTTTCCCTTTAAATTCATTGAATACATGAGTGAT
AAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_d12.g1 MSMg01no471_d12.g1 CHROMAT_FILE:
MSMg01no471_d12.g1 PHD_FILE: MSMg01no471_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:24 2005
         (635 letters)



>mm_chr2_115649848_115650882
          Length = 1035

 Score = 1199 bits (620), Expect = 0.0
 Identities = 631/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatgtttttgcaaaagaccagagttcggttccagtcactcttatgtgattcgcaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 931 ctgatgtttttgcaaaagaccagagttcggttccagtcactcttatgtggttcgcaacta 872

                                                                       
Query: 61  cctgcaactccaattccagaagattcaataatgccttcttctggcttttaccctcataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cctgcaactccaattccagaagattcaataatgccttcttctggcttttaccctcataag 812

                                                                       
Query: 121 tgcaatcccatacatatacaaataactaaaaaataaaaataacatctttaaaaaagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgcaatcccatacatatacaaataactaaaaaataaaaataacatctttaaaaaagagag 752

                                                                       
Query: 181 agatgcctaaacctgtaaccccagtgtgtggtaggtagagacaaggggaacactgggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 agatgcctaaacctgtaaccccagtgtgtggtaggtagagacaaggggaacactgggact 692

                                                                       
Query: 241 tactgactgccagccaggttgagtgagacattctgtctcaaaggaatgagattttagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tactgactgccagccaggttgagtgagacattctgtctcaaaggaatgagattttagaga 632

                                                                       
Query: 301 gttagaataggaaaccaaatgtccttctctggttcagtggatatgtacatgggtgtgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gttagaataggaaaccaaatgtccttctctggttcagtggatatgtacatgggtgtgtac 572

                                                                       
Query: 361 tttcatacacacatgtttacataaaccataccctcatacaaatatacacacacagaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tttcatacacacatgtttacataaaccataccctcatacaaatatacacacacagaagag 512

                                                                       
Query: 421 atttctcctttaagaagtcagcctcagccgagcagtggtggcgcacacttttaatcccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atttctcctttaagaagtcagcctcagccgagcagtggtggcgcacacttttaatcccag 452

                                                                       
Query: 481 cacttgggaggcagaggcaggcggatttctgagcacgaggccagcctggtctacagagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cacttgggaggcagaggcaggcggatttctgagcacgaggccagcctggtctacagagtg 392

                                                                       
Query: 541 agttccaggacagccagggctacacagagaaaccctgtctcgaanaaccaaaaaaaaaaa 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 agttccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaa 332

                                              
Query: 601 aaaccaaaaaaaaaaaaaagtcatcctcttactgt 635
           |||  ||||||||||||||||||||||||||||||
Sbjct: 331 aaaaaaaaaaaaaaaaaaagtcatcctcttactgt 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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