BAC Information

Click to search

BAC

Clone NameMSMg01-471E11
Chromosome2 (Build37)
Map Location 174,504,145 - 174,552,941
singlet/doubletdoublet
Overlap geneLOC100043757
Upstream geneRab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967
Downstream geneEdn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471E11.T7 (MSMg01no471_e11.b1)MSMg01-471E11.TJ (MSMg01no471_e11.g1)
ACCAG554083AG554084
length766765
length of high quality
(start - end)		649 (48 - 696)605 (73 - 677)
definitionCHROMAT_FILE: MSMg01no471_e11.b1 PHD_FILE: MSMg01no471_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:29 2005CHROMAT_FILE: MSMg01no471_e11.g1 PHD_FILE: MSMg01no471_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,552,310 - 174,552,941)(174,504,145 - 174,504,747)
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATTTTTACCTTTAGGCTCCCTGCTGTTCTGTAGCAGATCGTT
TTATTCAGTCTGCCTGTAATATCCAAAGAACTGATTATAAAGCCAGCAGC
ATACCCCACCCCACGAGCTCTATCTTCCTCAGATAAAGTAATGATGAAGC
CCACACAATGAGGCTCTGATGGTTGAGGGGTCTCACCTGTACCCCTGTCC
GTGGGTCTGTCTTGGCTAAGGGCCACAGCAATCTCTGGCTCTGTTAATGC
ACTGTGGTAAATGGATCCCATGAGAGGAGACCCCAGTTTTACTTTTCTTG
CTACTTGAAAGGACCGAGTGACCTCGGCAAGAGCTTGCTGGTTATTTATA
CACTCGCCCCATCACAACCACCATGGATTATCTAGCTTTGGGTCACCTGC
TCTACCCCAGGCAGGAACCTGGACGCTGGGGCAATGAGCCTAGCTCATCT
TTATTACACAGGTTTCCTGGCACCTATGGGCTACAGGTGGCTTAAAATGT
GAAAGATTCTGCATACCTTCCTTACTCAGAGACCAGTATGTGCCTTCTGT
TCCTTGTCATCTAGAACTGATGCATTCAAGACAGAATATTTTTTACAAAT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTGTGTCCAC
ATCAGCTTGTGAGGATCTATTGTCGTCTTCTCACGATATGTGGGGGTTTA
GGATCAAACTCACGTG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAACTCACCTACCACACATCCCGACTT
GGGGCACTGCGGGGTGCCGGTTGTCCTTCATGGTGGTGGGACTCAGAAAT
GGTTGCAGCCCATTGGCAAGAGACTGTAGAGCGCAACAGAGTCCACACCA
AAGTGGATGACGCTCAATGCTACTGAGCATGTGTTACCCCTCAACCAGTA
TGAACCACTCTGTGACTGGGGAGCCAGCTCCCTATTAAATGGAAGGTTGT
GTGGATTTGGTCATGCCCTCCTTTCTGAGGGCAGCTTTTTTGGGGAAAAT
CTTTTGTTTTGTAGAGAGATCTTGGTCTTGGTGCTATGAGAGGCTCAGTG
GAACTGAACTGGGGCCAGTGCCATGTCTGTAGAGTCAGATGGGATTTTAC
TGGATATGAGGCAAGAAGGCTCATTTTGTTCTACTATAAACAGAAGACCT
ACCACCTAAACAATTCCCTGTACATAGCTGTCTAGGGTCAATTTTACTTC
TATGTGTTATTTTAAATAGTCATCCATTTTAACGTTCATTAAGAATGTAA
TGTGTCCACAGGGCTGGTGCACGTATGAACTCACAGGCACTGTGGCCACA
TGCATAGGGCCTGTGTGGGTCTGTGCTAGATGGAGTCGTANGGATGAAAG
GAGAGATGGGCACACGACCCCATCTATAACCCAGAAGCTAGTTCCCATTG
AGCATCATTTGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_e11.b1 MSMg01no471_e11.b1 CHROMAT_FILE:
MSMg01no471_e11.b1 PHD_FILE: MSMg01no471_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:29 2005
         (649 letters)



>mm_chr2_174552139_174553187
          Length = 1049

 Score = 1145 bits (592), Expect = 0.0
 Identities = 622/632 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatttttacctttaggctccctgctgttctgtagcagatcgttttattcagtct 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaattcaatttccacctttaggctccctgctgttctgtagcagatcgttttattcagtct 744

                                                                       
Query: 65  gcctgtaatatccaaagaactgattataaagccagcagcataccccaccccacgagctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcctgtaatatccaaagaactgattataaagccagcagcataccccaccccacgagctct 684

                                                                       
Query: 125 atcttcctcagataaagtaatgatgaagcccacacaatgaggctctgatggttgaggggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 683 atcttcctcagataaagtaatgatgaagcccacacaatgaggctctggtggttaaggggt 624

                                                                       
Query: 185 ctcacctgtacccctgtccgtgggtctgtcttggctaagggccacagcaatctctggctc 244
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 ctcacctgtacccctgtccatgggtctgtcctggctaagggccacagcaatctctggctc 564

                                                                       
Query: 245 tgttaatgcactgtggtaaatggatcccatgagaggagaccccagttttacttttcttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgttaatgcactgtggtaaatggatcccatgagaggagaccccagttttacttttcttgc 504

                                                                       
Query: 305 tacttgaaaggaccgagtgacctcggcaagagcttgctggttatttatacactcgcccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacttgaaaggaccgagtgacctcggcaagagcttgctggttatttatacactcgcccca 444

                                                                       
Query: 365 tcacaaccaccatggattatctagctttgggtcacctgctctaccccaggcaggaacctg 424
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 443 tcaccaccaccatggattatctagctttgggtcacctgctctaccccaggtaggaacctg 384

                                                                       
Query: 425 gacgctggggcaatgagcctagctcatctttattacacaggtttcctggcacctatgggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacgctggggcaatgagcctagctcatctttattacacaggtttcctggcacctatgggc 324

                                                                       
Query: 485 tacaggtggcttaaaatgtgaaagattctgcataccttccttactcagagaccagtatgt 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 tacaggtggcttaaaatgtgaaagattctgcacaccttccttactcagagaccagtatgt 264

                                                                       
Query: 545 gccttctgttccttgtcatctagaactgatgcattcaagacagaatattttttacaaatt 604
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gccttctgttccttgtcacctagaactgatgcattcaagacagaatattttttacaaatt 204

                                           
Query: 605 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 636
           ||||||||||||||||||||||||||||||||
Sbjct: 203 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_e11.g1 MSMg01no471_e11.g1 CHROMAT_FILE:
MSMg01no471_e11.g1 PHD_FILE: MSMg01no471_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:29 2005
         (605 letters)



>mm_chr2_174503945_174504949
          Length = 1005

 Score = 1158 bits (599), Expect = 0.0
 Identities = 602/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaactcacctaccacacatcccgacttggggcactgcggggtgccggttgtccttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaactcacctaccacacatcccgacttggggcactgcggggtgccggttgtccttcatg 260

                                                                       
Query: 61  gtggtgggactcagaaatggttgcagcccattggcaagagactgtagagcgcaacagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtgggactcagaaatggttgcagcccattggcaagagactgtagagcgcaacagagt 320

                                                                       
Query: 121 ccacaccaaagtggatgacgctcaatgctactgagcatgtgttacccctcaaccagtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacaccaaagtggatgacgctcaatgctactgagcatgtgttacccctcaaccagtatg 380

                                                                       
Query: 181 aaccactctgtgactggggagccagctccctattaaatggaaggttgtgtggatttggtc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 aaccactctgtgactggggagccagctccctattaaatggaagattgtgtggatttggtc 440

                                                                       
Query: 241 atgccctcctttctgagggcagcttttttggggaaaatcttttgttttgtagagagatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccctcctttctgagggcagcttttttggggaaaatcttttgttttgtagagagatct 500

                                                                       
Query: 301 tggtcttggtgctatgagaggctcagtggaactgaactggggccagtgccatgtctgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtcttggtgctatgagaggctcagtggaactgaactggggccagtgccatgtctgtag 560

                                                                       
Query: 361 agtcagatgggattttactggatatgaggcaagaaggctcattttgttctactataaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcagatgggattttactggatatgaggcaagaaggctcattttgttctactataaaca 620

                                                                       
Query: 421 gaagacctaccacctaaacaattccctgtacatagctgtctagggtcaattttacttcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagacctaccacctaaacaattccctgtacatagctgtctagggtcaattttacttcta 680

                                                                       
Query: 481 tgtgttattttaaatagtcatccattttaacgttcattaagaatgtaatgtgtccacagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgttattttaaatagtcatccattttaacgttcattaagaatgtaatgtgtccacagg 740

                                                                       
Query: 541 gctggtgcacgtatgaactcacaggcactgtggccacatgcatagggcctgtgtgggtct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctggtgcacgtatgaactcacaggcactgtggccacatgcatagggcctgtgtgggtct 800

              
Query: 601 gtg 603
           |||
Sbjct: 801 gtg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |