BAC Information

Click to search

BAC

Clone NameMSMg01-471G12
Chromosome2 (Build37)
Map Location 33,440,648 - 33,441,239
singlet/doubletsinglet
Overlap geneLmx1b
Upstream geneSt6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764
Downstream geneLOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G12.T7 (MSMg01no471_g12.b1)MSMg01-471G12.TJ (MSMg01no471_g12.g1)
ACCAG554181AG554182
length732727
length of high quality
(start - end)
592 (78 - 669)642 (84 - 725)
definitionCHROMAT_FILE: MSMg01no471_g12.b1 PHD_FILE: MSMg01no471_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:38 2005CHROMAT_FILE: MSMg01no471_g12.g1 PHD_FILE: MSMg01no471_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAG
GATCCGCGGAATTCAGTTTTACATCAGCAAACTAGTTCTGCCTGACCATG
GCCACAGAGCCACGGACTGGGGGAGGGGCCACTCGGAAGTTGGCCATAAA
TTTCTTGAGATGCTTTAATTTTTTAAAAGCCCCATGTAGATGCTTTGCAT
TGCGAAAACCCACAAATATCGAGTAAATGAGGTGTGCCGGCAGAAGGCCT
GGCTGGGCCTGCAGCTCTTCCTTGCCCGCCCAGCAGCTGGGCCCAAGCTC
AGCTGGGGCCCCTGGCCTGGCCTGTCCAGGGCCGAGGGGCCCATCTTTGT
TCTGAGTAGGGCTCAGACTGCTGAGTGCCTGGGTAAATAGTCGCCACAGT
AATCGCAGCCTGATTCCAACTAATTAAATCCTGCGCCAAGAACCCACTCC
AGCAGAATCCCGTGAGGCCACGAAAACACAGACACCCCAGACGGGCTTTG
CTCAGGGTCGGGCCCGCTGCTCTAATCCTGTATCTTTTGAAAGATAGGCG
CGTCCTGGGATGAGGGGTCAGCAGCCTGCCCTGAGCAGAGCGGTGGAATT
TTTCAATAACCAGCAGCTGGGTCACCAGGCACACAAAGGCTGTGTAATAT
CCTGTGAGCTTACTCCGGTAGAAGAGCCAGCTCCCTCCAGGCCTGGGGCA
GCCGGCCCCCGCCGCCCAGGCCCCCAGCGGCN
AAGGGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATATTGGTTCCCTGA
ACTGTAGAGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTA
GAGTTGCCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCC
TGGAGGAATTGCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGCAG
GGGTGGTGGTTCCCACCTCATCTCCGTTTAACTCTCCTATCTGGCCAGTG
CAGAAAACAGATGGATCATGGATAATGACAGTTGATTATCGAAAACTAAA
TCAGGTGGTAACTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCGTTAC
TTGAGCAAATTAACACATCTCCTGGCACCTGGTATGCGGCTATTGATCTG
GCAAATGCCTTCTTCTCAGTGCCTGTCCATAAGGACCACCAGAAGCAATT
TGCTTTCAGTTGGCAAGGCCAACAGTATACCTTCACAGTTTTGCCTCAAG
GATATATTAACTCTCCTGCCCTGTGTCATAATTTAGTTAGAAGGGATCTT
GTTCGTTTGGATCTTCCACAAAATATCACATTGGTGCACTATATTGATGA
CATTATGCTGATTGGACCAAGTGAGCAGGAAGTAGCAACCACTTTGGACT
CATTGGTAACACATATGCGTATCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g12.b1 MSMg01no471_g12.b1 CHROMAT_FILE:
MSMg01no471_g12.b1 PHD_FILE: MSMg01no471_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:38 2005
         (592 letters)



>mm_chr2_33440448_33441439
          Length = 992

 Score = 1106 bits (572), Expect = 0.0
 Identities = 587/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaactagttctgcctgaccatggccacagagccacggactgggggaggggccactcgga 60
           ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct: 792 caaactagttctgcctgaccatggccacagagccatgggctgggggaggggctactcgga 733

                                                                       
Query: 61  agttggccataaatttcttgagatgctttaattttttaaaagccccatgtagatgctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agttggccataaatttcttgagatgctttaattttttaaaagccccatgtagatgctttg 673

                                                                       
Query: 121 cattgcgaaaacccacaaatatcgagtaaatgaggtgtgccggcagaaggcctggctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cattgcgaaaacccacaaatatcgagtaaatgaggtgtgccggcagaaggcctggctggg 613

                                                                       
Query: 181 cctgcagctcttccttgcccgcccagcagctgggcccaagctcagctggggcccctggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cctgcagctcttccttgcccgcccagcagctgggcccaagctcagctggggcccctggcc 553

                                                                       
Query: 241 tggcctgtccagggccgaggggcccatctttgttctgagtagggctcagactgctgagtg 300
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tggccagcccagggccgaggggcccatctttgttctgagtagggctcagactgctgagtg 493

                                                                       
Query: 301 cctgggtaaatagtcgccacagtaatcgcagcctgattccaactaattaaatcctgcgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cctgggtaaatagtcgccacagtaatcgcagcctgattccaactaattaaatcctgcgcc 433

                                                                       
Query: 361 aagaacccactccagcagaatcccgtgaggccacgaaaacacagacaccccagacgggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagaacccactccagcagaatcccgtgaggccacgaaaacacagacaccccagacgggct 373

                                                                       
Query: 421 ttgctcagggtcgggcccgctgctctaatcctgtatcttttgaaagataggcgcgtcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgctcagggtcgggcccgctgctctaatcctgtatcttttgaaagataggcgcgtcctg 313

                                                                       
Query: 481 ggatgaggggtcagcagcctgccctgagcagagcggtggaatttttcaataaccagcagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggatgaggggtcagcagcctgccctgagcagagcggtggaatttttcaataaccagcagc 253

                                                               
Query: 541 tgggtcaccaggcacacaaaggctgtgtaatatcctgtgagcttactccggt 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgggtcaccaggcacacaaaggctgtgtaatatcctgtgagcttactccggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)