BAC Information

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BAC

Clone NameMSMg01-471K11
Chromosome2 (Build37)
Map Location 36,086,133 - 36,086,751
singlet/doubletsinglet
Overlap genePtgs1
Upstream geneGsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493
Downstream geneOlfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471K11.T7 (MSMg01no471_k11.b1)MSMg01-471K11.TJ (MSMg01no471_k11.g1)
ACCAG554371AG554372
length748742
length of high quality
(start - end)		374 (330 - 703)611 (76 - 686)
definitionCHROMAT_FILE: MSMg01no471_k11.b1 PHD_FILE: MSMg01no471_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:58 2005CHROMAT_FILE: MSMg01no471_k11.g1 PHD_FILE: MSMg01no471_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGACGATCCGC
GGAATTCATGAATTTTCTAACAAATGGATGGAACAAGAAAATATCATGCT
GAGTGAGGTAACCCAATCTACAAACTAATATACATGGTATGTACTCACTG
ATAAGTGGATATTAGCCCAGAAGTTTGGAATACCCAAGATACAAGTCACA
GATCACGTGAAACTCAAGAAGAAGGAATACCAAAGTGTGGATACTCTGAT
CCTCTTAGAAAGGGGATCAAAATACCCAAGGGAGGAGGAGATACAGAGAC
AATGTGGAGCAGAAACTGAATTATAGTTCATACAGAGACTGTCCCACCTT
GGATCCATCTCATATACAATTACCAGTCCCAGACTCTATTGTGGATACCA
TCAAGTGCTTGCTAACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCT
CAAATACAGTGTTTGACAAATACAGAAGTGGTTGCTCACAGCCATTCATT
GGACTGAGCAGAGGGTCCCCAATTGAGGAGCTAGAGAAAGGACCCAAGGT
GCTGAAGGGGTTTGCAGTACCATAGGAGGAACAATAATATCAACCAACCT
CTACTCCCAGAGCTCCCAGGGACTAAACCACCAACCAGAGTACACATGGA
GAGACCCTTGTCTCCTGCAGAATATGTAGCAGAGGATGACCTGTGGGACA
TCAATTAGAGGAGAGGCCGTTTGTCCTATGAAGGTTTGATGACCCAGT

NCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGTGGCCTGCAGGCGGAGCCTTGAAC
GCTAGGCTCAACTCTCTCTTCCTTCTGCAGGAAGGAGTCTCTCGCTCTGG
TTTCCCCTGCTGCTGCTCCTGCTGCTGCCGCCGACACCCTCGGTCCTGCT
CGCAGATCCTGGGGTGCCCTCACCAGGTAGGTGCCCCCGCCGGATGCCCG
TGAAAATTCCAAGTCCTGCGCCGTGGGCTTGGTCCATCTCCCTTCCAGGC
GGACTCCCTGATTCCCCTTTCTGCTCGCGGTGCCGGGGGAATAGGGTGTT
GAGGTTATGGAATGGGGTCCCTGGAGAATGGCTAGGGCCTACCTGGGATC
TCTCTGGCACACAGCCCACTGAGATCCCGAGTCGGCAGGGGAAGCAGAGA
CAGGTTCTTTAACTTCTCACCTGATATGTGGTGCGACTTTCCAAGCAGCC
TCTGTACCCCCCCCCCCCAGAACTCGGCGGTTTCCTGTGGGGGCTCCTTG
GGGAGGAAGCGGCAGACGCCAAGGGGAAGGCGGGCTGGACACTGAGTTCC
TTTTCTTTGGCCTCTAACTTTTGGGGAGTCTATCTTAACGCTCAACCTAT
CTCCCCAACGGTAGATACAGGGATGGGGGTGGGGGACACCCGCTATCCTG
GGAATGGGGAAGTGGGCCCATATTGACCAGGAAATTGAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_k11.g1 MSMg01no471_k11.g1 CHROMAT_FILE:
MSMg01no471_k11.g1 PHD_FILE: MSMg01no471_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:58 2005
         (611 letters)



>mm_chr2_36085941_36086951
          Length = 1011

 Score = 1145 bits (592), Expect = 0.0
 Identities = 609/620 (98%), Gaps = 10/620 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggcctgcaggcggagccttgaacgctaggctcaactctctcttccttctgcaggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtggcctgcaggcggagccttgaacgctaggctcaactctctcttccttctgcaggaagg 252

                                                                       
Query: 61  agtctctcgctctggtttcccctgctgctgctcctgctgctgccgccgacaccctcggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agtctctcgctctggtttcccctgctgctgctcctgctgctgccgccgacaccctcggtc 312

                                                                       
Query: 121 ctgctcgcagatcctggggtgccctcaccaggtaggtgcccccgccggatgcccgtgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgctcgcagatcctggggtgccctcaccaggtaggtgcccccgccggatgcccgtgaaa 372

                                                                       
Query: 181 attccaagtcctgcgccgtgggcttggtccatctcccttccaggcggactccctgattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attccaagtcctgcgccgtgggcttggtccatctcccttccaggcggactccctgattcc 432

                                                                       
Query: 241 cctttctgctcgcggtgccgggggaatagggtgttgaggttatggaatggggtccctgga 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctttctgctcgcggtgccgggg-aatagggtgttgaggttatggaatggggtccctgga 491

                                                                       
Query: 301 gaatggctagggcctacctgggatctctctggcacacagcccactgagatcccgagtcgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaatggctagggcctacctgggatctctctggcacacagcccactgagatcccgagtcgg 551

                                                                       
Query: 361 caggggaagcagagacaggttctttaacttctcacctgatatgtggtgcgactttccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 caggggaagcagagacaggttctttaacttctcacctgatatgtggtccgactttccaag 611

                                                                       
Query: 421 cagcctctgtacccccccccccc---------agaactcggcggtttcctgtgggggctc 471
           |||||||||||||||||||||||         ||||||||||||||||||||||||||||
Sbjct: 612 cagcctctgtacccccccccccccccccccccagaactcggcggtttcctgtgggggctc 671

                                                                       
Query: 472 cttggggaggaagcggcagacgccaaggggaaggcgggctggacactgagttccttttct 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cttggggaggaagcggcagacgccaaggggaaggcgggctggacactgagttccttttct 731

                                                                       
Query: 532 ttggcctctaacttttggggagtctatcttaacgctcaacctatctccccaacggtagat 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttggcctctaacttttggggagtctatcttaacgctcaacctatctccccaacggtagat 791

                               
Query: 592 acagggatgggggtggggga 611
           ||||||||||||||||||||
Sbjct: 792 acagggatgggggtggggga 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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