BAC Information

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BAC

Clone NameMSMg01-472D05
Chromosome2 (Build37)
Map Location 85,030,796 - 85,031,205
singlet/doubletsinglet
Overlap geneLrrc55
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033
Downstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472D05.T7 (MSMg01no472_d05.b1)MSMg01-472D05.TJ (MSMg01no472_d05.g1)
ACCAG554790AG554791
length740749
length of high quality
(start - end)
586 (73 - 658)410 (82 - 491)
definitionCHROMAT_FILE: MSMg01no472_d05.b1 PHD_FILE: MSMg01no472_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:45 2005CHROMAT_FILE: MSMg01no472_d05.g1 PHD_FILE: MSMg01no472_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGTTTCCACCTAAACATGATAAAAGCAATCTACAGCA
AACCAGTAGCAAGCATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCA
CTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAA
CATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCA
AGTGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATACGTGACCCTAAAAATTCCACCAGAGAACTCCT
AAGCCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAA
ACAAGTCAATGGCATTTCTCTACACAAAGTACTTGGACAAACAGGCTGAG
AAAGAAATTAGGGAAACAACACCCTTCTCAATAGCAACAAATAATATAAA
ATACCTAGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGACAAGA
ACTTCATGACTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAG
GATCTCCCATGCTCATGGATCGGCTGGATCAATATAGGAAAAATGGCTAT
CTTGCCAAAAGCAATCTACAGATTTAATGCAATCCCCATCANAATTTCAA
CTCAATTCTTTCACGAATTAAAAAGGGCAATCTGGAGATN
CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGGAAAGTGGGAATGA
TAAAGACTATCTGGCAGTAAGAATAGCAAGAGATGAATCAGCAAATAGAA
CCATGCCCAGAGGAGTGCCTGGTCCTTATCGGCAACTTCATTAGTGTGGC
TTGAACTTGAATTTTCATAGCTTTAGAAAGAACTGTGATGAAGAATACTG
ATTTTATCTTGAACATGACATAGCAGGCATGCTACCTTCTCTGAGCCTGA
TGACCTTATCTGCCAAATGGGAATTATAAATCCCCCCAAAGGGCTGTTGT
ATGTGTGAAAGGAATGTTGGAGGAGGGAGCTTATACTGCCCGACACTAGC
AAGAACCAGCAATTAATAGCTATTCTTTCTTTATGCTCCAATGAACAAGT
TACTAAGGAGAGAAGACATACCGTCCTGTGGGGATGAATGTGGTGCCTTT
GTCCTTTTGCCCCGGCTATTGCCATGCTACTAACTGGTATTTTCTATAGT
ATTTCCCTCGGTAAGTACCCTTGAAGTGTTGCCCCTTTCCCATTAACCTC
CATCCCTCTGTCTCTCTTTGTGTTTTCGCTATTTCCCTCCTCGCCCACAA
TCATTCACTATTTTCTCTTTGTCCGCTGCCTCCCCTCTCTCTCCTATGCT
TCTTACTATCCCGTCCTCTTACCCTCCCTCTTCTCCCTCTTCTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_d05.g1 MSMg01no472_d05.g1 CHROMAT_FILE:
MSMg01no472_d05.g1 PHD_FILE: MSMg01no472_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:45 2005
         (410 letters)



>mm_chr2_85030596_85031405
          Length = 810

 Score =  770 bits (398), Expect = 0.0
 Identities = 407/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactggaaagtgggaatgataaagactatctggcagtaagaatagcaagagatgaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactggaaagtgggaatgataaagactatctggcagtaagaatagcaagagatgaatcag 260

                                                                       
Query: 61  caaatagaaccatgcccagaggagtgcctggtccttatcggcaacttcattagtgtggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatagaaccatgcccagaggagtgcctggtccttatcggcaacttcattagtgtggct 320

                                                                       
Query: 121 tgaacttgaattttcatagctttagaaagaactgtgatgaagaatactgattttatcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacttgaattttcatagctttagaaagaactgtgatgaagaatactgattttatcttg 380

                                                                       
Query: 181 aacatgacatagcaggcatgctaccttctctgagcctgatgaccttatctgccaaatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatgacatagcaggcatgctaccttctctgagcctgatgaccttatctgccaaatggg 440

                                                                       
Query: 241 aattataaatccccccaaagggctgttgtatgtgtgaaaggaatgttggaggagggagct 300
           ||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 aacaataaatccccccaaagggctgttgtatgtgtgaaaggaatgtcggaggagggagct 500

                                                                       
Query: 301 tatactgcccgacactagcaagaaccagcaattaatagctattctttctttatgctccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatactgcccgacactagcaagaaccagcaattaatagctattctttctttatgctccaa 560

                                                             
Query: 361 tgaacaagttactaaggagagaagacataccgtcctgtggggatgaatgt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaacaagttactaaggagagaagacataccgtcctgtggggatgaatgt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)