BAC Information

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BAC

Clone NameMSMg01-472F10
Chromosome2 (Build37)
Map Location 61,642,252 - 61,642,806
singlet/doubletsinglet
Overlap geneTbr1
Upstream geneRbms1, ENSMUSG00000075325, Tank, Psmd14
Downstream geneLOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472F10.T7 (MSMg01no472_f10.b1)MSMg01-472F10.TJ (MSMg01no472_f10.g1)
ACCAG554896AG554897
length743744
length of high quality
(start - end)
556 (50 - 605)468 (80 - 547)
definitionCHROMAT_FILE: MSMg01no472_f10.b1 PHD_FILE: MSMg01no472_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:56 2005CHROMAT_FILE: MSMg01no472_f10.g1 PHD_FILE: MSMg01no472_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTTCTCCGCCCCTCCTCTCTAAAGAGGGGGGGGGTAAGGA
ACTGTTTAGTAAATTGCACATCTTTGAATCTTCCTGAAGCAGTGGTCACA
AAGCTTAAAGGTGACATAACAGAGCTCACGTAAACCAACACACTTTCCCC
ACCCCCCAAGCCAACAATAAAATCATCCCCTTCAATTTGCCATGATCGTC
GCGACCAGGAGCCAGGTGATTATCCTAATTAATGTCTATCTAATTAAATT
ACTGTCAGCAGCTAATCTATGGCAAGAGCCGTTTCATCGGCTGCATAAGC
AGCAAGATCAAAAGTGAGCCTTTTCTGATTGCTGCATAGTGTCAATTGGC
CAATCTCTTCTCCCAGGGAAAAAAAAAAGTAAATCAAACCTTTGAGAAGC
ATTTGCTGGTTGAAGTGCTTTCTGTCTAGTGAGGGGTCTGTGGATTCCTA
GTGTATGATAAACAGGACTTTAAAACCCAGGGACGGGAGGGCCAGCGTTC
AGGTTCTAGAGCTATGCAGCTGGAGCATTGCCTCTCTCCTTCTATCATGC
TCTCCAAGAAATTTCTCAATGTGAGCAGCAGTTACCCACATTCGGGCGGA
TCTGAACTTGTCTTGCATGATCATTCCATTATTTCGATCACTTGACAACT
GGAGAGAAAGTCACCTTTGAAAAAAAATACCAGGGGGATGATT
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATGCTTAGTTCAGTGGTT
GAGCATCCACATGGTCAGACTCTGGCAGAGCCTCTTAGAGGACGGCTATA
CCAAGCTCCTGTCAGCAAGCACTTCTTGGCATCAGCAATAGTGTCTGGGT
TTGGTGTCTGCAGATGGGATGGATCTCTAGGTGGGACAGTCTCTAAGTGG
CCTTTCCTTCAGTCTCTACTCTACTCTTTATCCCTGCATTTCCTTTTGAC
AAGAACATTAACATGTTCTTATATTTTTGAGATGGGTGGGAGGCCCCATA
GACCACTGAAACTGTAAACAAGCTCCCAATTAAATGATTTCTTTTATAAG
ATTTGCCTGGGACATGGTGTCTTCACAATAAGAGAACACTGATTAAGACA
ATAGTGGACTAAAGAAACAGTTGAAAGCTCACATCTTGATGCACAACCAC
GAGTCTGAAAGAGAGCATTGGTAATCACATGAGACTTTTGAAATCTCAAA
GTCCACCTACATTAACACAATTTCTCCCACAAGAATACACCATGCAATCA
TGCCAAGATAGTTTCACCAACTGGGGACTAACTACAGGAACACGTGAAAT
CTAGGCGTTCTTTCTCATGCTTATCATCTTATTCTATTCCCTTGCCCTCT
AGACTCCTGTCTTAATTCATAGGTAAAATGCACTTATTTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_f10.b1 MSMg01no472_f10.b1 CHROMAT_FILE:
MSMg01no472_f10.b1 PHD_FILE: MSMg01no472_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:56 2005
         (556 letters)



>mm_chr2_61642048_61643006
          Length = 959

 Score = 1035 bits (535), Expect = 0.0
 Identities = 549/555 (98%), Gaps = 3/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttctccgcccctcctctctaaagag---ggggggggtaaggaactgtttagt 61
           ||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 205 gaattccctcctccgcccctcctctctaaagagaggggggggggtaaggaactgtttagt 264

                                                                       
Query: 62  aaattgcacatctttgaatcttcctgaagcagtggtcacaaagcttaaaggtgacataac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattgcacatctttgaatcttcctgaagcagtggtcacaaagcttaaaggtgacataac 324

                                                                       
Query: 122 agagctcacgtaaaccaacacactttccccaccccccaagccaacaataaaatcatcccc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagctcacgtaaaccaacacactttccccaccccccaagccaacaataaaatcatcccc 384

                                                                       
Query: 182 ttcaatttgccatgatcgtcgcgaccaggagccaggtgattatcctaattaatgtctatc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaatttgccatgatcgtcgcgaccaggagccaggtgattatcctaattaatgtctatc 444

                                                                       
Query: 242 taattaaattactgtcagcagctaatctatggcaagagccgtttcatcggctgcataagc 301
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 445 taattaaattactgtcagcagctaaccaatggcaagagccgtttcatcggctgcataagc 504

                                                                       
Query: 302 agcaagatcaaaagtgagccttttctgattgctgcatagtgtcaattggccaatctcttc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcaagatcaaaagtgagccttttctgattgctgcatagtgtcaattggccaatctcttc 564

                                                                       
Query: 362 tcccagggaaaaaaaaaagtaaatcaaacctttgagaagcatttgctggttgaagtgctt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcccagggaaaaaaaaaagtaaatcaaacctttgagaagcatttgctggttgaagtgctt 624

                                                                       
Query: 422 tctgtctagtgaggggtctgtggattcctagtgtatgataaacaggactttaaaacccag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgtctagtgaggggtctgtggattcctagtgtatgataaacaggactttaaaacccag 684

                                                                       
Query: 482 ggacgggagggccagcgttcaggttctagagctatgcagctggagcattgcctctctcct 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggacgggagggccagcgttcaggttctagagctatgcagctggagcattgcctctctcct 744

                          
Query: 542 tctatcatgctctcc 556
           |||||||||||||||
Sbjct: 745 tctatcatgctctcc 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 959
Length adjustment: 10
Effective length of query: 546
Effective length of database: 949
Effective search space:   518154
Effective search space used:   518154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)