BAC Information

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BAC

Clone NameMSMg01-472F22
Chromosome2 (Build37)
Map Location 122,566,911 - 122,700,605
singlet/doubletdoublet
Overlap genePldn, Sqrdl
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472F22.T7 (MSMg01no472_f22.b1)MSMg01-472F22.TJ (MSMg01no472_f22.g1)
ACCAG554919AG554920
length788799
length of high quality
(start - end)
246 (71 - 316)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no472_f22.b1 PHD_FILE: MSMg01no472_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:59 2005CHROMAT_FILE: MSMg01no472_f22.g1 PHD_FILE: MSMg01no472_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,700,360 - 122,700,605)(122,566,911 - 122,567,257)
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCG
GAATTCAACTTTCTCATATCCCATATGCAAATGAAATCAGAGTATTTGAT
TTGTCTGGTTTGTTTCATTCAGTATAATACATCAATCACTATTCATGTCA
CAAATGGCAGGACTTTCTTCTGTTATGGTGGAATAATTTTCCAGTCTGTT
TTTATGCAATTATTTAGAAGACATGGGAGGGGGGGTTAATCCTAATCTGT
TTTTGGCAATGTTTCTTGGGATGGGGAAAGAGGTGCATAAGACAACAAAA
TATAAGCAACAAAAGAATATTTTATAGAGTGAGTTTACATAAAATAAGGC
TTATGCTTAGCAAATGAATCAATGCACAAAGTAAAAAGGAACTGTGCAAT
GGAAGAAAATATTCTCAAACTCTATATCTGAAAGGGATTAATATCAAAAA
TAACTCAATAACAAAGTGTAAGCAGTTTTTAAAATGAGCAACAAATGAAA
ACGTGTATTGCTTTCTAAAAAATTAAGATATGAAAATGGCCAGCAGGTTC
ATGAAAAGATGTTCCACACCACCCGTCCTCAGGAAAGGTAAAACCTAAGT
GCTTTGAAATTTCCTCTTTGGTGGAATACCCTGTTAATAATTAAATACTT
ACTCTTTTTTTTTTTTTGTTTTCTTAAAAAATATTCCCTGTATTCCTGTT
TTTCTTAATTTAAGCACTTACATTTACCATTTACTAACCTCATTTTCTCT
CTTTTATTTATTTTTCTCTTCAATTTCCTCTTCTTTTN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTGTTTGTGTTTTCAGGGTT
AAAGTTAAAATTGTTACAGAGGTAAGAGCATCCAGTGTGTCTAACCACTG
AGCTGTCTCTCCAGTCCAGTCTTAATTTGATGTTCCCTGATTCTTACTAG
ACTATAATTGACAACAGGTGTTTCAAAGTTAACATTAACTATGGAATGCT
TTCTGGGTACAGTTTTAGTGAATACTTTACCTTTAGCTCATTCAGAATTA
ATGTTTGTAAAAACCTTGTTATTTTTCGCTGACCCCACTTAGAAACCGTG
TATTATTTTTCTGGGAACAGTAATTGGTGGGTGTTTACCTTAGATGTTGG
GGTGCCTGGAAAAGGATGCAGTGTCATTCCTGGCAGCAGGTTGAGACTGG
TCATGGCACAGTCAGCACACTATTCCCTATAGCAGATTAGGCTATGTAAT
GTTTGCCCCCACTTTGAATTGTGTCTGCCCCCTATTGAACTTGTGGTATT
GTGCCCACGTTCTGTTTGCCTCTTCCCCCTTCTGACTTTTCTTACTTTAT
TCCCTTCCTTCCTATATAGTATTTTCTTTTTATTTAAATTTTTTTCTATC
TCCCTTTCTTTTTTTTTTGTCTTCTCTTTATCCTCTTACTTTTTTTCTCT
CTTTATTATCACCATTGCGTGTTCTTCTCACAATCCTCCTCTTTCCTCTT
CTTTTATTTTTCTTCTCCATATTTTTTTAATCCCCTCTTTTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_f22.b1 MSMg01no472_f22.b1 CHROMAT_FILE:
MSMg01no472_f22.b1 PHD_FILE: MSMg01no472_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:59 2005
         (246 letters)



>mm_chr2_122700023_122700668
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatatgcaaatgaaatcagagtatttgatttgtctggtttgtttcattcagtataatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ccatatgcaaatgaaatcagagtatttgatttgtctggtttgtttcattcagtataatac 524

                                                                       
Query: 61  atcaatcactattcatgtcacaaatggcaggactttcttctgttatggtggaataatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atcaatcactattcatgtcacaaatggcaggactttcttctgttatggtggaataatttt 464

                                                                       
Query: 121 ccagtctgtttttatgcaattatttagaagacatgggagggggggttaatcctaatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccagtctgtttttatgcaattatttagaagacatgggagggggggttaatcctaatctgt 404

                                                                       
Query: 181 ttttggcaatgtttcttgggatggggaaagaggtgcataagacaacaaaatataagcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttttggcaatgtttcttgggatggggaaagaggtgcataagacaacaaaatataagcaac 344

                 
Query: 241 aaaaga 246
           ||||||
Sbjct: 343 aaaaga 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no472_f22.g1 MSMg01no472_f22.g1 CHROMAT_FILE:
MSMg01no472_f22.g1 PHD_FILE: MSMg01no472_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:59 2005
         (347 letters)



>mm_chr2_122566711_122567457
          Length = 747

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatttgtttgtgttttcagggttaaagttaaaattgttacagaggtaagagcatccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttgtttgtgttttcagggttaaagttaaaattgttacagaggtaagagcatccagt 260

                                                                       
Query: 61  gtgtctaaccactgagctgtctctccagtccagtcttaatttgatgttccctgattctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtctaaccactgagctgtctctccagtccagtcttaatttgatgttccctgattctta 320

                                                                       
Query: 121 ctagactataattgacaacaggtgtttcaaagttaacattaactatggaatgctttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagactataattgacaacaggtgtttcaaagttaacattaactatggaatgctttctgg 380

                                                                       
Query: 181 gtacagttttagtgaatactttacctttagctcattcagaattaatgtttgtaaaaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacagttttagtgaatactttacctttagctcattcagaattaatgtttgtaaaaacct 440

                                                                       
Query: 241 tgttatttttcgctgaccccacttagaaaccgtgtattatttttctgggaacagtaattg 300
           ||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaccattcgctgaccccacttagaaaccgtgtattatttttctgggaacagtaattg 500

                                                          
Query: 301 gtgggtgtttaccttagatgttggggtgcctggaaaaggatgcagtg 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgggtgtttaccttagatgttggggtgcctggaaaaggatgcagtg 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)