BAC Information

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BAC

Clone NameMSMg01-472H06
Chromosome2 (Build37)
Map Location 122,891,029 - 122,891,573
singlet/doubletsinglet
Overlap genenone
Upstream gene4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472H06.T7 (MSMg01no472_h06.b1)MSMg01-472H06.TJ (MSMg01no472_h06.g1)
ACCAG554983AG554984
length752760
length of high quality
(start - end)
578 (73 - 650)545 (79 - 623)
definitionCHROMAT_FILE: MSMg01no472_h06.b1 PHD_FILE: MSMg01no472_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:06 2005CHROMAT_FILE: MSMg01no472_h06.g1 PHD_FILE: MSMg01no472_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATAGTAGCCAAAGTAGCAGGTGTGCAACAAAACATCTTTCA
ATCTATGTTTACAGCCTGCTCTAGAAATAAACTAAGGAATTCCCATTGCT
ATATTGGAGTTACTGGTTGGGTGACTTTGATGCAAAAATTCCTCTCTGTG
GTTGAGCATTCCATTAGGTTCTTTACCTATAGACAGCTCTGTATCATGAG
ATAAAGAATAGTAACAAATGTTGGAAGTAGTTTACCCATTATCTGTCCTT
AACGGGACTGTGTTCTTACTCTGAAAGCTGTTACATTTTCCTTGTTCTTA
TCACAGAGTAAAGGGACCAGCCTGATTCAGGACAGGGATTTTGGAGGACA
TTTTGAGACAAAAATGCTTGAGTGTGTTATGGAAGGGGCCTTTGGAATAG
CAAATCTCATTGCCGGAGCCAGCTTCTCATTGAGTAAACAGCACAGATTC
ATTTGCTAATATAACATATATGTAGGAGGCATTCACTTCTTTATAAAATT
AAACTTAGTGCCTAATTGATAGGAAACTTGCTGTTGAGTCCTGACAACTG
GCTGGACTCAAGCATCAGACCCCTTATGACATCCAAACAAGGCTTATCTG
TTGGGTCTTTCTTTGGAAGCACGTATTGACAATAGACAGAAAGTAGTTTC
TTTTCTTTTAAAGGTTTTAGAGGGCCATAAGGGACAGACCATTTGATTTT
CC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCAATATTCAAGACAGTCA
GTGCTTTTAAAACCGGGGAACATGGGAAATGAGAGACTATTCCCTACACA
GAAAGTGATTCGAGCAACCCCTTTTTCGATTTCAAAATGTTCACATTTTT
GTAATTCATGGGACTTTTCTCTGTAGCAAACGAAGAAAACCATTGTCCAT
AAAATTTAGCAGCTTTGAGCAAAATTGAGGAAATGCTGGGGAAAATTCTG
CAGTGCTGTTTTGTCTACAGAACACTAAAGGGAAATAATAGCTGAGAGGC
GGCAAGAAATGACTAGTCTCTGCTATAAAGGAATTAGCTTGGTAAATGTA
TTCTTTTTTAAATTAAAAAGAAATTGCCTCAATTAACTGCTTTTAGGGGA
AAAAAGGGCATAACGGTATTTTAAAAACAAAGCTTCCTGGGAATTGCAGG
TATTTATTTTAAATCAACTTGGTTAAGAACCTTAACTTGCTCTACAGATC
ACTGACTAAATGATACCATAGTAAGAAAACAGAGATGACGATTTTTTTCT
TCATGATCTTCCTCCACGCTCAGGAAAGGGAGGTAGTCTCTTTTAACCAA
GCCTCACTGAATCTCAATACTGGTTAACTATTTATTGAGCGTGGATCTGA
ATAGACCCACACCTATCTACTCTTAAGCCTTGCATCGGCTAAACCTCTGG
CGAATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_h06.g1 MSMg01no472_h06.g1 CHROMAT_FILE:
MSMg01no472_h06.g1 PHD_FILE: MSMg01no472_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:06 2005
         (545 letters)



>mm_chr2_122890829_122891773
          Length = 945

 Score = 1054 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcaatattcaagacagtcagtgcttttaaaaccggggaacatgggaaatgagagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcaatattcaagacagtcagtgcttttaaaaccggggaacatgggaaatgagagact 260

                                                                       
Query: 61  attccctacacagaaagtgattcgagcaacccctttttcgatttcaaaatgttcacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccctacacagaaagtgattcgagcaacccctttttcgatttcaaaatgttcacattt 320

                                                                       
Query: 121 ttgtaattcatgggacttttctctgtagcaaacgaagaaaaccattgtccataaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaattcatgggacttttctctgtagcaaacgaagaaaaccattgtccataaaattta 380

                                                                       
Query: 181 gcagctttgagcaaaattgaggaaatgctggggaaaattctgcagtgctgttttgtctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagctttgagcaaaattgaggaaatgctggggaaaattctgcagtgctgttttgtctac 440

                                                                       
Query: 241 agaacactaaagggaaataatagctgagaggcggcaagaaatgactagtctctgctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacactaaagggaaataatagctgagaggcggcaagaaatgactagtctctgctataa 500

                                                                       
Query: 301 aggaattagcttggtaaatgtattcttttttaaattaaaaagaaattgcctcaattaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaattagcttggtaaatgtattcttttttaaattaaaaagaaattgcctcaattaact 560

                                                                       
Query: 361 gcttttaggggaaaaaagggcataacggtattttaaaaacaaagcttcctgggaattgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttaggggaaaaaagggcataacggtattttaaaaacaaagcttcctgggaattgca 620

                                                                       
Query: 421 ggtatttattttaaatcaacttggttaagaaccttaacttgctctacagatcactgacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtatttattttaaatcaacttggttaagaaccttaacttgctctacagatcactgacta 680

                                                                       
Query: 481 aatgataccatagtaagaaaacagagatgacgatttttttcttcatgatcttcctccacg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgataccatagtaagaaaacagagatgacgatttttttcttcatgatcttcctccacg 740

                
Query: 541 ctcag 545
           |||||
Sbjct: 741 ctcag 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)