Query= MSMg01no473_a04.b1 MSMg01no473_a04.b1 CHROMAT_FILE:
MSMg01no473_a04.b1 PHD_FILE: MSMg01no473_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:51 2005
(288 letters)
>mm_chr2_67952957_67953644
Length = 688
Score = 518 bits (268), Expect = e-151
Identities = 280/284 (98%)
Strand = Plus / Minus
Query: 1 tagtataatgggttcaaaccacataacttttgcataatcaggtctccatccagtaagaac 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 tagtataatgggttcaaaccacataaattttgcataatcaggtctccatccagtaagaac 323
Query: 61 tctgaaatatatactccagtagcctcctagagaacatttctgctttagggtgcactagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctgaaatatatactccagtagcctcctagagaacatttctgctttagggtgcactagaa 263
Query: 121 gatgataacgaggtcaggatgaatggattcaagcaaataaggaagtgtgatactttaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatgataacgaggtcaggatgaatggattcaagcaaataaggaagtgtgatactttaggg 203
Query: 181 caagcagttctcaacttggggatcacaaccttcaacggtcacatatcagatattctgcat 240
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 202 caagcagttctcaacttgtggatcacaaccttcaacggtcacatatcatatattctgcat 143
Query: 241 gtcagatacttacattattactcataacagtagaaaaattacag 284
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 142 gtcagatacttacattatgactcataacagtagaaaaattacag 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_a04.g1 MSMg01no473_a04.g1 CHROMAT_FILE:
MSMg01no473_a04.g1 PHD_FILE: MSMg01no473_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:51 2005
(538 letters)
>mm_chr2_67801111_67802049
Length = 939
Score = 971 bits (502), Expect = 0.0
Identities = 531/543 (97%), Gaps = 6/543 (1%)
Strand = Plus / Plus
Query: 1 acaactagaaactagtaagtcaagagatatgttgttttttctaccctgccaactgtgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaactagaaactagtaagtcaagagatatgttgttttttctaccctgccaactgtgaca 260
Query: 61 gcctgtcaaaatatttgaagttattactgagctttatttttaacaattttagttataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgtcaaaatatttgaagttattactgagctttatttttaacaattttagttataaaa 320
Query: 121 atactgctattttctgaataacgttcaatgataggataatatgcacaaaggataaaatga 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atactgctattttctgaataacgttcaatgataggataatatgcacaagggataaaatga 380
Query: 181 agatagtgcccggccactgtttcccagaggtgaagcatcctccttcctcctctgccaaga 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatagtgcctggccactgtttcccagaggtgaagcatcctccttcctcctctgccaaga 440
Query: 241 tccaaccacaagcacctctttatgtgcatagagtcgttgttcatgatcactcagtagtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaaccacaagcacctctttatgtgcatagagtcgttgttcatgatcactcagtagtct 500
Query: 301 ctaacctacttttttcttaaaaagaaaaaaaaaa-ggaaaggaagaaagaaaaagaaaat 359
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 501 ctaacctacttttttcttaaaaagaaaaaaaaaaaggaaagga-gaaagaaaaagaaaat 559
Query: 360 gtgcaccattaatttcaagatttggcatcgaagaatcttgagtgattacactaagttgga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgcaccattaatttcaagatttggcatcgaagaatcttgagtgattacactaagttgga 619
Query: 420 gtgactttagacagatactgctaagctccaaatgggacaaatccagataaattgatgtga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgactttagacagatactgctaagctccaaatgggacaaatccagataaattgatgtga 679
Query: 480 aattatggtgtttttatgttagngaacattaaaggctttaagggaaagaaa----aaaag 535
|||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct: 680 aattattgtgtttttatgttaatgaactttaaaggctttaagggaaagaaagaaaaaaag 739
Query: 536 gta 538
|||
Sbjct: 740 gta 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
