BAC Information

Click to search

BAC

Clone NameMSMg01-473B05
Chromosome2 (Build37)
Map Location 24,643,528 - 24,643,933
singlet/doubletsinglet
Overlap genenone
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473B05.T7 (MSMg01no473_b05.b1)MSMg01-473B05.TJ (MSMg01no473_b05.g1)
ACCAG555460AG555461
length768803
length of high quality
(start - end)		609 (70 - 678)406 (74 - 479)
definitionCHROMAT_FILE: MSMg01no473_b05.b1 PHD_FILE: MSMg01no473_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:57 2005CHROMAT_FILE: MSMg01no473_b05.g1 PHD_FILE: MSMg01no473_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTTAAGTTTACTGCAATCTTCAACATCTCACCCTTTTTGTCCAA
TAAAAAAGCCTCTTTTCTCTCAGATATAAATTGAGCACAACCGTAACAAT
TATGTAAATTATAAAGTATGATATATAACTAATATCTAGTCCATCAATTT
TATATATATTATTCCATATATATTATTACTATAGCATTATAGATAGAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTACTCT
AACATTTATCTTAACTTAATGAGCTTACTATTCTATACCCGAATTATGTT
TTGGTTTTAACTTGTATTATTATCTGAAAGCCATTCTTTCAAATCAACAT
CATCTTCCTCAATATTAAACAACTTAAGTTTGATTATGAGACTATAACTA
GTCTTCAACCCTGTCAGAAATCCAAGAACAAATTAAATACTACCTGAATA
TATAGGAAGCATAAAACATAGCTTCCAAAACTTAACGAGACAGCTGATAC
CTGGACAGTCCCCCATTCCTCANATCACTGAAGCATCTGTCTTTAGGCTC
ATATATGTGCATACTTGATCCCCATCCGGGGGAACTGTTTGGGAAAGTGT
AAAGAATACATGTAGGGGCTGGAGAGATGGCTCAGCAGNTAAGAGCACTG
GCTGCATGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACACATGGT
GGCTTCCAACCATCTGTA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTAGGGGTGGGGTAGGGAGGGAAA
GGCAATACAGAGATGCTCTACAGACAAGAACAGACAACCCAGATCAAAGC
TAGGTTGCATTATAAGTCACTGGCTGACTTCTCTACAGTCTAGAACAGAC
AAAACAACTTGTGATGGAAGGAATCAACACTGGAGACAACTTGAGGTTGT
GGCAGCTGCCTGGAAGAAGCCAGGGCATTGACTGAGTGAAGGAATAGTAA
GATTCCTTGGCAAAGCCACATGCCAGAATTTGTGTAGCCAGAATGACAAA
AGACAAAAGTCTATAAACCATGCCTTGGTAAAACCTCGTCAATTTGGAGT
TACCACACACCACGCGCTAGGCTCCATTTGTATCCAAGAGCAATCCTTAA
AACCAATACGGTACAGAACTGCCGCTGGTGAACGTGCCCATCACCCCAGC
GAGGAGACTGCCTATGGCGAAAAGGGAATTAAAAACCATCTGAACAGGCG
ATTCTCCTAATACAAATAATAAGAATGTGGGCGACAAAGCACTTATGTGC
TAGGGCCTTGGGGCCAGGTCTCTCTCTGGGTTTCTTTCTTCCTCCTCTGA
TACGGGCCCACTATGGAACCCGGGGAAACCTTTAACTGCGCTCCAAATTT
CCTCGAGTTCCAATTGTCCTCTCATCCTCCGTCCGTCTCTGGTCTGAGGC
GCGGAGTTCCCTCTCATCCGGCCTCTGTTGTTATTCCGCTCCACCCATTT
CCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_b05.g1 MSMg01no473_b05.g1 CHROMAT_FILE:
MSMg01no473_b05.g1 PHD_FILE: MSMg01no473_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:57 2005
         (406 letters)



>mm_chr2_24643328_24644133
          Length = 806

 Score =  704 bits (364), Expect = 0.0
 Identities = 397/408 (97%), Gaps = 4/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctaggggtggggtagggagggaaagg-caatacagagatgctctacagacaagaaca 59
           |||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 201 tttccaggggtggagtagggagggaaaggtcaatacagagatgctctacagacaggaaca 260

                                                                       
Query: 60  gacaacccagatcaaagctaggttgcattataagtcactggctgacttctctacagtcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaacccagatcaaagctaggttgcattataagtcactggctgacttctctacagtcta 320

                                                                       
Query: 120 gaacagacaaaacaacttgtgatggaaggaatcaacactggagacaacttgaggttgtgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagacaaaacaacttgtgatggaaggaatcaacactggagacaacttgaggttgtgg 380

                                                                       
Query: 180 cagctgcctggaagaagccagggcattgactgagtgaaggaatagtaagattccttggca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctgcctggaagaagccagggcattgactgagtgaaggaatagtaagattccttggca 440

                                                                       
Query: 240 aagccacatgccagaatttgtgtagccagaatgacaaaagacaaaagtctataaaccatg 299
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggccacatgccagaatgtgtgtagccagaatgacaaaagacaaaagtctataaaccatg 500

                                                                       
Query: 300 ccttggtaaaacctcgtcaatttggagttaccacacaccacgcgctaggc-tccatttgt 358
           |||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||
Sbjct: 501 ccttggtaaaacctcgtcaatttggagttaccacacaccatgcact-ggcctccatttgt 559

                                                           
Query: 359 atccaagagcaatccttaaaaccaatacggtacagaactgccgctggt 406
           |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 atccaagagcaatccttaaaac-aatacggtacagaactgccgctggt 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |