BAC Information

Click to search

BAC

Clone NameMSMg01-473D07
Chromosome2 (Build37)
Map Location 9,632,696 - 9,633,180
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040710, LOC100040548, LOC100040566
Downstream geneGata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473D07.T7 (MSMg01no473_d07.b1)MSMg01-473D07.TJ (MSMg01no473_d07.g1)
ACCAG555559AG555560
length786766
length of high quality
(start - end)
79 (173 - 251)486 (76 - 561)
definitionCHROMAT_FILE: MSMg01no473_d07.b1 PHD_FILE: MSMg01no473_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:10 2005CHROMAT_FILE: MSMg01no473_d07.g1 PHD_FILE: MSMg01no473_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAATTTGTGGCGGCAAANGAGGAANAAATTTCGTACCCCGCGGAANNN
AGAGNNATTTTCCCAAAAGCTATAGAGGAAANNCTCAGAACTAAACTGAA
AGGCAGGTGTTGTGACTAATGCCAATAATAGCCCTCGGGAGGCTGAGGGA
GGAAGATGGCTAGTTCTACGTAGTCTAGGCTACATGGTGAGACTCTGCCT
AAAATAAAATAAATGAAAATATTAACTAAAGTGGAAAGTTCAAAACACAG
ATTCTCTGAATGGCAGCTAGACCTATCTGCCTGCTGACATTTGATGTGAC
TCCAAGTACCTGGNGGAACTTTTTTTTTCAGNGAGGGAATGAAAGAGCTC
TGGCCTTCTTACTGAGTGACTTTAGTGATTCATATTTGCATGGGGGAATT
TGTACAGCCACTAGCCTCATTAACCTCATATACCATTGTGATTAATGTTA
CATTTTCCAGAACTCTTGGCCTTGCCATTAAAACTCATCATTGAACCCCT
GCATTTTTATATTAAACAGTCCCACTCTGCAAGTTTGTCCCTAATTCCTG
GTGTTGATGCCTACATTCCCAGTGCTCTTTACCCTCCTGTCTCTTGCCAA
ATCTCTCCTTGTTAAAAAATTTGCCAACTTGTTATTAACATTCTTTTATT
AGTTGGGATGGTATTTCTCTTGATCTTTTCTTGTCATCTCTCCCTTTTTG
CTGGCACACACTTGATGCTGGACTTTTCCTGCGTGTTCAATCCTTTGTTC
TCCAGCCGACAAGCTCCCTTCCCGGCCTCCCCGGTN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTTTCTGTTTATGTGTTTTTA
TAAAAACTCAGTAAAAGAGACTCATTGGAAGAGATATTGTTTTATCATAT
TTGCCTGACATCTGATCTGATACTTGAGCTTAAGCAGGCAACATGGCTGA
TTTGAAGTCCCCAAGGACCTCATGCTAATGAGCTGAGAGCAGATAGCCAT
GATTTGCTGATAGCTTGCTCACTGTTTCCATCCTACGATAATCTGCAGTC
ATTTGGCCCATTTCTCAAAGACCTACTTGTTTTGTTCGAACTCATGAACT
TCCTAAAAGTCTAGCCACTAAACTCCATTTGGAGAACCAATGGCTCCTAC
TCAAGAACATTTATTTTATTCCTTTCTTCAGTTCAAGAGCCTTCCGGAAC
CCAGGATAAGGCATCAGCTGGCAGTGTTTCCTTGCTCAACAAGAAATTTT
CATACCGACCAGATATCATGCTTATAACTGGCCCAAATCCGCACCGGAGT
TTCCCTGTCTTATTGGTTTGGAAACCAGAGTACAGTTTGCTCATTTGATT
ATCTGTCTATCTGTCTATCTATCTATCTATCTATCTATCTATCCATCTAT
CCATCCATCTATCTATCTATCTATCCATCTTATTGTATGTCAAAGTCTCA
ACTACGTACCCTCGCGTTGCCCTGTAACCTGTTATTGCAATTTAGGCCGA
ATCCTGCACCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_d07.g1 MSMg01no473_d07.g1 CHROMAT_FILE:
MSMg01no473_d07.g1 PHD_FILE: MSMg01no473_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:10 2005
         (486 letters)



>mm_chr2_9632496_9633380
          Length = 885

 Score =  810 bits (419), Expect = 0.0
 Identities = 470/489 (96%), Gaps = 7/489 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctttctgtttatgtgtttttataaaaactcagtaaaagagactcattggaagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcttctttctgtttatgtgtttttataaaaactcagtaaaagagactcattggaagagat 626

                                                                       
Query: 61  attgttttatcatatttgcctgacatctgatctgatacttgagcttaagcaggcaacatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 attgttttatcatatttgcctgacatctgatctgatacttgagcttaagcaggcaatatg 566

                                                                       
Query: 121 gctgatttgaagtccccaaggacctcatgctaatgagctgagagcagatagccatgattt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 tctgatttgaagtccccaaggacctcatgctaatgagctgagagcagataaccatgattt 506

                                                                       
Query: 181 gctgatagctt-gctcactgtttccatcctacgataatctgcagtcatttggcccatttc 239
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgatag-ttggctcactgtttccatcctacgataatctgcagtcatttggcccatttc 447

                                                                       
Query: 240 tcaaagacctacttgttttgttcgaactcatgaacttcctaaaagtctagccactaaact 299
           |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 446 tcaaagacctacttgaattgttcgaacccatgaacttcctaaaagtctagccactaaact 387

                                                                       
Query: 300 ccatttggagaaccaatggctcctactcaagaacatttattttattcctttcttcagttc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccatttggagaaccaatggctcctactcaagaacatttattttattcctttcttcagttc 327

                                                                       
Query: 360 aagagccttccggaacccaggataaggcatcagctggcagtgtttccttgctcaacaaga 419
           |||||||||||  ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 326 aagagccttcccaaacccaggataaggcatcagctggctgtgtttccttcctcaacaaga 267

                                                                       
Query: 420 aattttcataccgaccagatatcatgcttataactggcccaaatccgcac--cggagttt 477
           |||||||||||| |||||||||||| |||||||||||||||||||   ||  ||||||||
Sbjct: 266 aattttcataccaaccagatatcatacttataactggcccaaatc---acatcggagttt 210

                    
Query: 478 ccctgtctt 486
           |||||||||
Sbjct: 209 ccctgtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space:   416500
Effective search space used:   416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)