NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAT
CCGCGGAATTCTCCCCTTTTCCTACATATATGTGTAAGTATAACTAATTT
TTCTAGCACTTTGACCATCCCCGTTATAGTTAATTCTTATGGCAATGCAT
TTACTCTGTGCACAGAGTGAGAATTCTGAACTCCATTCCTTTTGCTCCCA
TGCCCGGCAACCCCGCCTCCTTCCCATCTCTGGCAGAACAAGTCTTCCTC
TGTAAATGCAATGGCCCAGCTCTTCGGCCGACTCTTCTGATACAGCAGAG
TGTGTTCTTATTCCACCAACCTGTCTAGTTTTATAATTTTGACACTATCT
TTTTTTTTCTATGAGAAAATACACATGGCATAAAACTGACTCTCTTAACA
AGAATTAACACTTCAGAGGCGTGAAGTCCAGTCACAGAATTGTGATTGAC
ACCTCTGCCCGTCACCACAAAGCCACCACCTCAGCTGCTATGTTACATGA
GAAAGCACCTGACAAGACACTTGCATTATCTTGTTTTAAAGGGTTTTTAT
TTTTTGCTCTGAATTCTTCCATGGAAACTTCGAAATGCTTCTTTTTAAAG
CCCTTTCCAGAAAACATTTTANAAATCTATTTGGAAATAAACTATTGGAG
TGAATTTACTTTTCACAAGTATTTAGTAGCCACAACCTAAAATATCCCAA
ATCTTCAGCATGTGGTCACCAATAGCATGTTG

NNNNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTANAAA
GAATGAATTTATGAAATCACCTAAGCTTTAATAACCGAAAATGTTGAGCA
CTAATAAGGCATTAACAGACATATAATGGGAAAAGTGAGTTGGTAATCCA
GGAAGAAGGGCTGCCATGGAGAGAGCTTCAGCATGTCAGGTAGCACCTCT
ACATCAGGGAGGTGATGAAGCCATTGGCATCACACCAGGG

Query= MSMg01no473_f03.b1 MSMg01no473_f03.b1 CHROMAT_FILE:
MSMg01no473_f03.b1 PHD_FILE: MSMg01no473_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:21 2005
         (598 letters)



>mm_chr2_178921861_178922859
          Length = 999

 Score = 1129 bits (584), Expect = 0.0
 Identities = 595/599 (99%), Gaps = 1/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgtaagtataactaatttttctagcactttgaccatccccgttatagttaattctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atgtgtaagtataactaatttttctagcactttgaccatccccgttatagttaattctta 740

                                                                       
Query: 61  tggcaatgcatttactctgtgcacagagtgagaattctgaactccattccttttgctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tggcaatgcatttactctgtgcacagagtgagaattctgaactccattccttttgctccc 680

                                                                       
Query: 121 atgcccggcaaccccgcctccttcccatctctggcagaacaagtcttcctctgtaaatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atgcccggcaaccccgcctccttcccatctctggcagaacaagtcttcctctgtaaatgc 620

                                                                       
Query: 181 aatggcccagctcttcggccgactcttctgatacagcagagtgtgttcttattccaccaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatggcccagctcttcggccaactcttctgatacagcagagtgtgttcttattccaccaa 560

                                                                       
Query: 241 cctgtctagttttataattttgacactatc-tttttttttctatgagaaaatacacatgg 299
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 559 cctgtctagttttataattttgacactatcttttttttttctatgagaaaatacacatgg 500

                                                                       
Query: 300 cataaaactgactctcttaacaagaattaacacttcagaggcgtgaagtccagtcacaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cataaaactgactctcttaacaagaattaacacttcagaggcgtgaagtccagtcacaga 440

                                                                       
Query: 360 attgtgattgacacctctgcccgtcaccacaaagccaccacctcagctgctatgttacat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attgtgattgacacctctgcccgtcaccacaaagccaccacctcagctgctatgttacat 380

                                                                       
Query: 420 gagaaagcacctgacaagacacttgcattatcttgttttaaagggtttttattttttgct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaaagcacctgacaagacacttgcattatcttgttttaaagggtttttattttttgct 320

                                                                       
Query: 480 ctgaattcttccatggaaacttcgaaatgcttctttttaaagccctttccagaaaacatt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgaattcttccatggaaacttcgaaatgcttctttttaaagccctttccagaaaacatt 260

                                                                      
Query: 540 ttanaaatctatttggaaataaactattggagtgaatttacttttcacaagtatttagt 598
           ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 259 ttaaaaatctatttggaaataaactattggagtgaatttacttttcaaaagtatttagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 999
Length adjustment: 10
Effective length of query: 588
Effective length of database: 989
Effective search space:   581532
Effective search space used:   581532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)