Query= MSMg01no473_h22.b1 MSMg01no473_h22.b1 CHROMAT_FILE:
MSMg01no473_h22.b1 PHD_FILE: MSMg01no473_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:36 2005
(258 letters)
>mm_chr2_128403269_128403926
Length = 658
Score = 466 bits (241), Expect = e-136
Identities = 253/257 (98%)
Strand = Plus / Minus
Query: 1 ttgtgaaaatgtcaccgccttacatgtctaatatgcaggagtcttccttatgtctcctat 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 457 ttgtgaaaatgtcaccgtcttacatgtctaataggcaggagtcttccttatgtctcctat 398
Query: 61 aaatgagccagttgcttggttacttcacaccggctttgtttgcaaaaaggagcttacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaatgagccagttgcttggttacttcacaccggctttgtttgcaaaaaggagcttacagt 338
Query: 121 gtcccagttgagcacaacccatggcatttgtagggcagtttattaagtttggtttcttta 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtcccagttgagcacaacccatgccatttgtagggcagtttattaagtttggtttcttta 278
Query: 181 ttctctcccatgtgtatttatggagctcagttgtttccctcttagggagggtgggaagct 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttctctcccatgtgtatttatgtagctcagttgtttccctcttagggagggtgggaagct 218
Query: 241 ttttcagttcctgccag 257
|||||||||||||||||
Sbjct: 217 ttttcagttcctgccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_h22.g1 MSMg01no473_h22.g1 CHROMAT_FILE:
MSMg01no473_h22.g1 PHD_FILE: MSMg01no473_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:36 2005
(424 letters)
>mm_chr2_128221956_128222779
Length = 824
Score = 799 bits (413), Expect = 0.0
Identities = 424/431 (98%), Gaps = 7/431 (1%)
Strand = Plus / Plus
Query: 1 tttggcacatcaaaattataaaatatcttaaagattttttttt--aaaaggagatgggga 58
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 199 tttggcacatcaaaattataaaatatcttaaagattttttttttaaaaaggagatgggga 258
Query: 59 gaaggttcagttagtggaatgcttgccccacaggcatattaaaaacaaataaataaataa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaaggttcagttagtggaatgcttgccccacaggcatattaaaaacaaataaataaataa 318
Query: 119 caggtatggccctccaaagctagggagacagaggcaggacagctcctaggacttgcccag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caggtatggccctccaaagctagggagacagaggcaggacagctcctaggacttgcccag 378
Query: 179 cctagccagccagctgataacctctgggttttgtttgtttgtttgtttttccttttcttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctagccagccagctgataacctctgggttttgtttgtttgtttgtttttccttttcttt 438
Query: 239 ctttctctttttgttttttgatttttttttttttt-----gagacagagtttctctgtat 293
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 ctttctctttttgttttttgatttttttttttttttttttgagacagagtttctctgtat 498
Query: 294 agccatggctgtcctggaactcgctctgtagaccaggctggtctcgaactcagaaatctg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agccatggctgtcctggaactcgctctgtagaccaggctggtctcgaactcagaaatctg 558
Query: 354 cctgcctctgcctcccaagtgcaccaccactgctcagcttaagctctgggtctggtgact 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cctgcctctgcctcccaagtgcaccaccactgctcagcttaagctctgggtctggtgact 618
Query: 414 cgtcctgcctc 424
|||||||||||
Sbjct: 619 cgtcctgcctc 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
