BAC Information

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BAC

Clone NameMSMg01-474E12
Chromosome2 (Build37)
Map Location 36,004,064 - 36,004,310
singlet/doubletsinglet
Overlap geneMrrf
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474E12.T7 (MSMg01no474_e12.b1)MSMg01-474E12.TJ (MSMg01no474_e12.g1)
ACCAG556380AG556381
length7591,136
length of high quality
(start - end)
242 (74 - 315)---
definitionCHROMAT_FILE: MSMg01no474_e12.b1 PHD_FILE: MSMg01no474_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:40 2005CHROMAT_FILE: MSMg01no474_e12.g1 PHD_FILE: MSMg01no474_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGCAGCACCGCG
GAATTCTACAGTTTCACCACCTGAGGCCCTTTTGTACCCAAGAGCTTGAC
CAGGAAGATTCCGTTTAGGTTAATAGCTTCCTGAAAGTGGCTTTCCTAAG
TGGGAAATGTCAGAACTGTCTAGAACTGTTTGCAGATGTGATGGAGAAGT
GGGTTGTCAGCTAATGGTACAAGTGGGCAGGAAAAATCCAATTGCTGTTA
AATTGGCCTTTTGCAAATTGTCATCATCCTATAGTTAAGCCTGGGACCCC
CCCCCCCCCCACCAAGTTANCTGCGGGAACTTCAGCCTCTCTCATTCATG
TTTTGATTGGCGAAGTTTGTAAAGAAAATAGAAGATATTTCATGAACTTG
TTTGTGAAAAGTCCTCAGTTCATTATAAAAATGATCAGAACCATGTTGAG
TTCAGAGATGCGATCTGGTGGGAGACTAGAAGGCAGTTCCTGGCATTTGT
TAACCTTTGTGCTGGGGTGTTTCTGCCTCTGCTGACAGTACCGCGTGCCA
TTTCATCTCTCCCAACTGGGTATTTTTAAGCTTTGCTTATTATTTTCATC
TTGAAACTTGATATAAGTGTCCGTCCCCCCCTGTGGCTTCTTGGCCTTTT
TTTTTTTTTTCCCCCTCAATCCTAATAACACCCTTTGCATAACATCCCCT
CGCAAAATCTGGTTACTCTTCATAGATACCTTCCTTAGTTTCTCCTTTTT
GTTGACTTT
CCCCTTAAANNNCAGAAGGTGAGGTTGTAGTGGAGATGGCAGTTATTACT
TATACATGTTAGAGGGGCTCGTCGCGCGGNCGGTTACCTCACTATTATAA
TATCTGACGTTCTATATATAGAATCAGGCGAATCAGGCGGGGAGGTGGGT
TAGATATTACTATGAAACATAATATATGATATGTTATGTATGTAGACGTT
ATAATTAAAAAAACGTACGAGAATATGCGGAGTGAAATACAATAGCAATT
ATATTCTATATTATGTGTAGGAGGGGAGGCGGACGGTGAGAGAATATAGG
ATCGATTGAGAGATAGCGGGTGGGTCGGGCGGTGTGGGTGCTCTTGGTGT
GGTAGATATAGTAGAGAGCAGCCATATGAGTGTGTGTGGATTTGGGGCGA
TCGGGGTGTAGTATGAACATTTTGAGGTTGGATGTAAGAGCGTCTTCTAG
TGTAGCAAACCGCGTCTCTATTGTTGTGGGGTGTGGGGACGAAGATGTAG
GATAAAGGAGATGCGGACGAGGAGACGGGAGCACTAAAGTATGTAGAGGA
TTGGAGAGATAGTGAGTGGAGAGAGTAGATAGAGACGACATACAAGTGTT
AGGGTTGTCATAATGCAAATGGGGGCAGTGGCTGTAGTATGAGACATGAA
GTGTGAGTGGGGAGGTTTCACGTGGGGGGTGGGGGGGGGGGTAAAGAAAT
GAACGTGTGGAAGTGGGGTGACTGACAGGTGGAGGAAGATGATACAAATT
GAAGGTAATGAAAGGAGGATGGTAGAGGTGCTAAAAATAATTAGATTATA
CTTGGCTAGTATAGCGAGCTTCATGTGAGAAAGTGTCGTATAGATATATT
AAGATATGTTTATACGCAGTTGTTGGGTGTTACGGAGTGAGAGGTAGGGA
TAATTTAGTATGGGAAGCTGGTAATTATAATAGCTAGTTGTCTGACGTCG
TATACGGGTGCTATAGCATAGTTTAGGGGCAATATAAGAGATAACATGTA
GCGGGTGGTAGTTGAGATATTATGGTGAGTGAATGAATAGTTGANGGTAA
GTACGTATANTCGGACGCATGGAGGGAAAGGTGTAATGTGCGATAGTTGA
TTAGAGGCGAGTTTGTTTAGTATGAAGTATATGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_e12.b1 MSMg01no474_e12.b1 CHROMAT_FILE:
MSMg01no474_e12.b1 PHD_FILE: MSMg01no474_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:40 2005
         (242 letters)



>mm_chr2_36003864_36004508
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/247 (97%), Gaps = 5/247 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcccttttgtacccaagagcttgaccaggaagattccgtttaggttaatagcttcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcccttttgtacccaagagcttgaccaggaagattccgtttaggttaatagcttcctg 260

                                                                       
Query: 61  aaagtggctttcctaagtgggaaatgtcagaactgtctag---aactgtttgcagatgtg 117
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 261 aaagtggctttcctaagtgggaaatgtcagaactgtctaggagaactgtttgcagatgtg 320

                                                                       
Query: 118 atggagaagtgggttgtcagctaatggtacaagtgggcaggaaaaatccaattgctgtta 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagaagtgggttgtcagctaatggtacaagtgggcaggaaaaatccaattgctgtta 380

                                                                       
Query: 178 aattggccttttgcaaattgtcatcatcctatagttaagcctgggacccccccccccccc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattggccttttgcaaattgtcatcatcctatagttaagcctgggacccccccccccccc 440

                  
Query: 238 --accaa 242
             |||||
Sbjct: 441 ccaccaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 645
Length adjustment: 9
Effective length of query: 233
Effective length of database: 636
Effective search space:   148188
Effective search space used:   148188
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)