BAC Information

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BAC

Clone NameMSMg01-475B23
Chromosome2 (Build37)
Map Location 37,350,925 - 37,351,377
singlet/doubletsinglet
Overlap geneRabgap1
Upstream geneOlfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26
Downstream geneGpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475B23.T7 (MSMg01no475_b23.b1)MSMg01-475B23.TJ (MSMg01no475_b23.g1)
ACCAG557023AG557024
length786769
length of high quality
(start - end)
456 (46 - 501)416 (81 - 496)
definitionCHROMAT_FILE: MSMg01no475_b23.b1 PHD_FILE: MSMg01no475_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:47 2005CHROMAT_FILE: MSMg01no475_b23.g1 PHD_FILE: MSMg01no475_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAAGCCTTTCCCACTGCCAGCCCCTGATAAAGATGAAGATGCAG
CAGTATGCACAGCCCTCCCTATACATAAACCAACCTCTCTACACTTACCT
TCTTCTTCATCATCTTCTGGGGGAGAGGGGATCATGGAGCTCTGGGATCC
AGACTGTGGCAGGCGAACTGAAGGACTGGCTGTGGTTTTCCTCCTCTCTC
TCTCTGACTCACTCTCCAAACACACAACTTCATATAAAGTGTCAGCATTA
TTCTTTTTCTCCTTTTGCTTTATCTTGATGACAAAAAAGAATGTATTATG
TAGCAAACGTCTTTGTTTTAATTATCATTTTTAGTTTTGTATTGGATGCA
AGAACAAGTGGTGTTTCTTGAATCCACACTAAATGTAACCGTTATCAAGT
AGAGAAGTGTAAGTTAAAGGCCTGACATGGTCTTTTAATCCCAGCACATG
GGAATCAGAAGCACTACAGTTTTATAGTTTTATATGTCATTAAAAAAAAT
CATCGACTATTTAATTCCCAACTAATATTTGACAAAAGGCCATGGGGAAG
GCAACTGGCCCGTGGCCTTTCCAACAAATTTAAGTGGGCTTTTCCGGTTC
CCCCCCTAACAGCCCCTTCCTAATCCCTGCGAAAATCCACAAGTTTACCA
CTGAAAAACCCCCTCCTTCTTTTGGCTTAGTTAAACCCAAAAAAACGCCC
TTTTTTTCTTCGTTTTAATCCCTCCTGTCGAACGCA
NTTTCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACAC
AGAGAAACTCTCTCAAAAAACAAAAGAGCAAAAATCTCCAAGCCCACTCC
CAAGTGACATACTTCCTCCAGCAAAGCCAAATCTCCAAATCTTCCCAAAC
AGCTCCACCAACTGGGGACCAAGTGGCCAAAAGCTTGAGACTTTGAGGAT
CATTTCTCATTCAAAACCCTACAGACCTCATGGGGCTGTACCATGTGCTG
CTAATCTGAGGGCAACAGAAAGAGTCCAGTAGAGGGGAAGACATGTTGTA
TATCTGGTTGTCTATTGGTGAGCCCACCAGGCTCCGATAGTTAGTTCCAA
ATTCAGGTACAGACAGGTGCTCCCAATTAAGATCTATGTGACACTAAACA
AAACCAAAATTAATTAATAAGGCAAAGAGATTTATATATGGGATGTACTT
TTACAGGGTGGACAGGAAATGTTAGGAGAGGAAACGAAATTTTTTTCACC
CTCGATTTCGAAAGACTAAAATGCGGGGCCTCTGGCTATTGGAAGGGTTG
AAACGCTTTAAGCTGCACTCCCCCATTTTCCTCCCCCTTGCCTTTCCCCC
CCACTCTTGCTCTTCACCCTCTCTTATTTCTTCCCCTTTAACCCTTATCT
CCCTTCCCTACTCTTTTTTTCCCCTCTTTCTTCACCCCTTTCTCCTTTAC
CCCCCTTCCCTTTATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_b23.b1 MSMg01no475_b23.b1 CHROMAT_FILE:
MSMg01no475_b23.b1 PHD_FILE: MSMg01no475_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:47 2005
         (456 letters)



>mm_chr2_37350721_37351577
          Length = 857

 Score =  853 bits (441), Expect = 0.0
 Identities = 450/455 (98%), Gaps = 5/455 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaagcc---tttcccactgccagcccctgataaagatgaagatgcagcagtat 61
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattctaaagccaca--tcccactgccagcccctgataaagatgaagatgcagcagtat 600

                                                                       
Query: 62  gcacagccctccctatacataaaccaacctctctacacttaccttcttcttcatcatctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gcacagccctccctatacataaaccaacctctctacacttaccttcttcttcatcatctt 540

                                                                       
Query: 122 ctgggggagaggggatcatggagctctgggatccagactgtggcaggcgaactgaaggac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctgggggagaggggatcatggagctctgggatccagactgtggcaggcgaactgaaggac 480

                                                                       
Query: 182 tggctgtggttttcctcctctctctctctgactcactctccaaacacacaacttcatata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tggctgtggttttcctcctctctctctctgactcactctccaaacacacaacttcatata 420

                                                                       
Query: 242 aagtgtcagcattattctttttctccttttgctttatcttgatgacaaaaaagaatgtat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aagtgtcagcattattctttttctccttttgctttatcttgatgacaaaaaagaatgtat 360

                                                                       
Query: 302 tatgtagcaaacgtctttgttttaattatcatttttagttttgtattggatgcaagaaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tatgtagcaaacgtctttgttttaattatcatttttagttttgtattggatgcaagaaca 300

                                                                       
Query: 362 agtggtgtttcttgaatccacactaaatgtaaccgttatcaagtagagaagtgtaagtta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agtggtgtttcttgaatccacactaaatgtaaccgttatcaagtagagaagtgtaagtta 240

                                              
Query: 422 aaggcctgacatggtcttttaatcccagcacatgg 456
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 aaggcctgacatggtcttttaatcccagcacatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space:   377762
Effective search space used:   377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)