BAC Information

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BAC

Clone NameMSMg01-475K01
Chromosome2 (Build37)
Map Location 148,656,242 - 148,656,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13
Downstream geneCst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475K01.T7 (MSMg01no475_k01.b1)MSMg01-475K01.TJ (MSMg01no475_k01.g1)
ACCAG557410AG557411
length776746
length of high quality
(start - end)
182 (81 - 262)423 (82 - 504)
definitionCHROMAT_FILE: MSMg01no475_k01.b1 PHD_FILE: MSMg01no475_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005CHROMAT_FILE: MSMg01no475_k01.g1 PHD_FILE: MSMg01no475_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCCATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAC
ACCGCGGAATTCCACTGCAATACCCCTAGAGTCCCTTCAATGGCAGATAA
CCTCCTTAGGAGGAGTTGTTCTCCTAAACCAGCGGCCCCTGAACTTACTG
ACTGCTAAACTGGGAGGGATTTGCATTTTCTTTTTCTTTTTTATTAGATA
TTTTCTTTATCTCCATTTCAAATGTTATCCCCTTTCCTGGTTTCCCCTCC
AAAAAAAAAAATTTTTTTAAAAACCCTATTCCATCTCCCCACCCACTGCT
CACCAACCCACCCATACCCATTCCCTGTCTTGTTATTCCCCTACACTGGG
GCATCGAGCCTTCACAGGACCCAGGGCCTCTCTTCCCATTGATGTCCAAC
AAGTTCATCCTCTGAAGAAGGAATGTGCCCTCGATGTTAATGAATCTGGG
CCACCGGGACACAGATGCCCTAATGCTCTAAGATCCCCGGGAAGATCTCC
AGACACACTATGCTCCCTTCCTCCCTATCCTTTGTCATTCATATCCTTTT
GGCAGCTTGGTTTCTCCCTTCTTTGCGCCCCCTCCCCTATTTTCTCTGCC
AACCCCTGTTTTTTTCGGTATCCCCGCCCCCACCCAATTTTCTTATTATC
CGTTCCCTTTTATCCTTGTCCCCGCTCCCCTTTTCTCCCTCTTTCTTCTG
CTTCTATACCCTCCCCTATTTCTCGCCCCCCCTTTTTCTCCCCGCTTCTT
TTTCCAATACTTCTTTTTTTACACAT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCAGCATTACCAGAT
AGTGAGTTGAGGCACTCAGGACCAAATAGAACTTGGAGGCCAGAGGAGCT
ATGATGCAAAACAGCAACTGTCCTCCTTCTTTCTAAACCCTCAATTTAGA
TAATAACACCTACTCTAGAGGATTCCTTAGCTTGGTGTGAGNTAAGTAGG
AAATGGCTTTCTCAGGGATCAATCAGAAACTGAAATGAGGCCATGAATGA
CAGCAAAGGTGATGATGTAATTGGCAGGTGCTTTGCCAGTGCCTTGCTAA
TTCCATCCATGCTATGTGAACTTCATGAGAGAATAAGGGACCCCATGGAG
CCACTGTGGACAGTTGAAGTTATTTGTGTTTGGAGATTTGTTAGGCTAGA
AGTAACACCCATTTGTTGGCTACGGATTCCCTTTCCTCTGCAATGATGGA
ACCACTTAGAGAAGGCTACCCAACCCCAGAAAATAGTATCACACATTCTC
AGCACTAATTTCAAAGGAAACTCTTATTTAATAAAGTCAGTATGTCGTCT
GGTGGTGGTCTCATAATCTGACAAGGGTGTTTATTCACGTTATAAGAAAA
ACTACCACTGCTCGTGTGGTTCCCGAATGGCTAACTCGGTGAACCCTTGT
TCGTCGCCGCTCCCGAAACGTGTACTGTATTTATACTTTCCCTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_k01.g1 MSMg01no475_k01.g1 CHROMAT_FILE:
MSMg01no475_k01.g1 PHD_FILE: MSMg01no475_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:28 2005
         (423 letters)



>mm_chr2_148656042_148656864
          Length = 823

 Score =  797 bits (412), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtcagcattaccagatagtgagttgaggcactcaggaccaaatagaacttggaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttgtcagcattaccagatagtgagttgaggcactcaggaccaaatagaacttggaggcc 564

                                                                       
Query: 61  agaggagctatgatgcaaaacagcaactgtcctccttctttctaaaccctcaatttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaggagctatgatgcaaaacagcaactgtcctccttctttctaaaccctcaatttagat 504

                                                                       
Query: 121 aataacacctactctagaggattccttagcttggtgtgagntaagtaggaaatggctttc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 aataacacctactctagaggattccttagcttggtgtgagctaagtaggaaatggctttc 444

                                                                       
Query: 181 tcagggatcaatcagaaactgaaatgaggccatgaatgacagcaaaggtgatgatgtaat 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagggatcagtcagaaactgaaatgaggccatgaatgacagcaaaggtgatgatgtaat 384

                                                                       
Query: 241 tggcaggtgctttgccagtgccttgctaattccatccatgctatgtgaacttcatgagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggcaggtgctttgccagtgccttgctaattccatccatgctatgtgaacttcatgagag 324

                                                                       
Query: 301 aataagggaccccatggagccactgtggacagttgaagttatttgtgtttggagatttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aataagggaccccatggagccactgtggacagttgaagttatttgtgtttggagatttgt 264

                                                                       
Query: 361 taggctagaagtaacacccatttgttggctacggattccctttcctctgcaatgatggaa 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 taggctagaagtaacacccatttgttggctacagattccctttcctctgcaatgatggaa 204

              
Query: 421 cca 423
           |||
Sbjct: 203 cca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)