Query= MSMg01no475_l09.b1 MSMg01no475_l09.b1 CHROMAT_FILE:
MSMg01no475_l09.b1 PHD_FILE: MSMg01no475_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:35 2005
(457 letters)
>mm_chr2_85007755_85008612
Length = 858
Score = 870 bits (450), Expect = 0.0
Identities = 456/458 (99%), Gaps = 1/458 (0%)
Strand = Plus / Plus
Query: 1 cccatctcctgacaataagccatagagtctgccatagcatcctgtcagaggcagcaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatctcctgacaataagccatagagtctgccatagcatcctgtcagaggcagcaacag 260
Query: 61 gatatatgttgagggtgggagcatgtggcagccctactgcacagcttcctgcccatctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatatgttgagggtgggagcatgtggcagccctactgcacagcttcctgcccatctac 320
Query: 121 ctcctagtctatgaacctcatgaagtagttgccaggaatcagagggagatgaagacttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctagtctatgaacctcatgaagtagttgccaggaatcagagggagatgaagacttcc 380
Query: 181 cctccacagggatcccagactgacagtgaggcagagtctgggcagccttgcatcttacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccacagggatcccagactgacagtgaggcagagtctgggcagccttgcatcttacag 440
Query: 241 ccttcttc-tgatctgcccctacaaccactggccctgctttgagtacagaagtttgctgg 299
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttcttcatgagctgcccctacaaccactggccctgctttgagtacagaagtttgctgg 500
Query: 300 gcagatgttcatcagcctctgatgctgtggagtcaagaagtagaagggtggtccatacct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagatgttcatcagcctctgatgctgtggagtcaagaagtagaagggtggtccatacct 560
Query: 360 gcaaatcaatgctctaactacagcgtggctaaaggttccctgattgctgaaggcagagtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaatcaatgctctaactacagcgtggctaaaggttccctgattgctgaaggcagagtt 620
Query: 420 tgcctgtagaaacacagtgataaagaagagaggaagtt 457
||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctgtagaaacacagtgataaagaagagaggaagtt 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space: 379056
Effective search space used: 379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_l09.g1 MSMg01no475_l09.g1 CHROMAT_FILE:
MSMg01no475_l09.g1 PHD_FILE: MSMg01no475_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:35 2005
(331 letters)
>mm_chr2_85172202_85172932
Length = 731
Score = 304 bits (157), Expect = 6e-87
Identities = 272/343 (79%), Gaps = 54/343 (15%)
Strand = Plus / Minus
Query: 35 atatccagtaagagaccctaagactaaagatacactgaa-aacaaaacatggaaacacct 93
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 731 atatccagtgagagaccctaagacaaaagatacactgaataacaaaacatggaaacacct 672
Query: 94 ga---taacctctggcttccacatcaatagagaactttgcacaagtggacaaacaca--- 147
|| |||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct: 671 gatattaacctctggcttccacaacaatagagaagtttgtacaagtggacaaacacacac 612
Query: 148 ------------------------------------------a-acacacactatttaaa 164
| ||||||||||||||||
Sbjct: 611 acacacatacacacacacacacacacacacacacacacacacacacacacactatttaaa 552
Query: 165 ttgtttttaatctaaaaaaaaaatttatgccaagaataacaacattcatctataatccta 224
|| ||||||||| ||||||||||| ||||| |||| ||| ||| |||||||||||||
Sbjct: 551 ttctttttaatc----aaaaaaatttaagccaaaaatagcaatatttatctataatccta 496
Query: 225 acactaggaaggtgaataaggctgttcctgggagcttattattattcccagtctatgtaa 284
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 495 acactaggaaggtgaattaggctattcctggaagcttattattattcccagtctatgtaa 436
Query: 285 actggcaagctctaagttccttgaaaaactggcacaaataata 327
||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct: 435 actggcaagctctaagttctttgaataactggcgcaaataata 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
