BAC Information

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BAC

Clone NameMSMg01-475P02
Chromosome2 (Build37)
Map Location 120,335,512 - 120,335,784
singlet/doubletsinglet
Overlap geneZfp106
Upstream geneExdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3
Downstream geneSnap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P02.T7 (MSMg01no475_p02.b1)MSMg01-475P02.TJ (MSMg01no475_p02.g1)
ACCAG557651AG557652
length742768
length of high quality
(start - end)
278 (20 - 297)403 (83 - 485)
definitionCHROMAT_FILE: MSMg01no475_p02.b1 PHD_FILE: MSMg01no475_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:53 2005CHROMAT_FILE: MSMg01no475_p02.g1 PHD_FILE: MSMg01no475_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTTCCAGAGGATCCGCGGAATTCTCCCATGTGCCGTTCACTGT
CCTTCTCCAGGCCCCTATCTGTCCTCCAACAAAGCTGGGAGGGAGAAAAT
GGTTCACAGCCAGACCCACCACTAGCAAAGTGTGAGCAGTCTGAGGATAG
GTTGGTCACACACAACGCAGGTCCGCTCTAGAGCCTGTAAGTGACATTTA
AGCAGTTTCTAAGAAACCTACTCTTCTGGAACAAATGACATACAGTGGTT
TGTGCTGCTAGTTTATAGGTGTTTATTAAAGATGCAGATTTTAATTATTT
TACCCAGTTTGACCCTAATCATACATATAGTTTATTGATTCAGTTTGTGA
TTTTTGTTTTATGCTCTTATGACGGCTTATAATAGATTTTTTGAGATCAG
CTTTAATTCCTCCTTTTGAAATACCTGGGCACCTAAATTTAATGTTTTTT
TTTTCATATATTTATGCGCCTTGTTTCATTATTGACGTATCTGCTACAAG
TTTGTCTATCATCGTTTTATCTATTCCCTTCACTGTCTTGTAATTGCTCC
GCCTCTCCTCCTTTCTGCTTTTTTTTTATCTCTACTCCTGCCCACTAACT
TTACTTTTATCGTACCCTTCTTCTTCTCCTTCCCTTCTCTTCTCCTTTTT
TCTTTCCTCTCCTCTTCCTTTTTATCCTCTATCTTCCCCCCTCCTTCCTT
CATTATCCATTTCTCAGTTTTTTCCTCTCCCCTTTTTCCCTN
NTCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAAACCCAGTGAG
CATCCCTCCCCATGTTGTAGATGACAAAACTGATGTGTGAGGTCCCAGAA
CACTCTGAAGGCAGGACAAAGTGTAGGTTGACAGTTTTGTCGCTGAGTGG
GTGTCCCAATCTCTCCACTTGAAGTCTTGCTTGGTTACAGAAGATAGCTG
GTTCAGGCTCCATGCCCCCATTACTAGGAGTCTTTGCTAGGGTTACTCTC
TTAGATTCCATGAGATGGCTGGTTCAGGCTCCATGGCCCCCATTACTAGG
AGTCTTTGCTAGGGTTACTCTATTAGATTCTGTGGAGTCTCCATTGGATT
AGGTTCCACCTTGACCCCCAAGTGCTCCCCCCATTCCAGTTGTTTCTCCC
GGTATTTTCTCCCTCCTGACTTGATCCCTCCTGTTCCCAACCCCACCTGT
TCCCTCATCCCCTATGGAATCTATTCTATTTCCCCTTCCCAGGGATGTCC
TCCACATCCCCTTTTAAGCCTTCCCTGTTACTTATCTTCTCCTGGGCCTT
CGTCGGTCCTTCCCACTGCGATCTCTTGGGTTTTTGCTTACTTTCCCCTC
CCCTTGCCTCCTCTTTTTCCCCTTATTTCCCTCTGTTTTACCTTCCCTCC
TTTCTTTTTTCCCCCACTCTCCCCTTTTGTTTCTCCCTTCCCCCGCCTGT
TCTCTCCTCTTCCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p02.b1 MSMg01no475_p02.b1 CHROMAT_FILE:
MSMg01no475_p02.b1 PHD_FILE: MSMg01no475_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:53 2005
         (278 letters)



>mm_chr2_120335307_120335984
          Length = 678

 Score =  520 bits (269), Expect = e-152
 Identities = 272/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcccatgtgccgttcactgtccttctccaggcccctatctgtcctccaacaaag 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattctcccatgggccgttcactgtccttctccaggcccctatctgtcctccaacaaag 419

                                                                       
Query: 66  ctgggagggagaaaatggttcacagccagacccaccactagcaaagtgtgagcagtctga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctgggagggagaaaatggttcacagccagacccaccactagcaaagtgtgagcagtctga 359

                                                                       
Query: 126 ggataggttggtcacacacaacgcaggtccgctctagagcctgtaagtgacatttaagca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggataggttggtcacacacaacgcaggtccgctctagagcctgtaagtgacatttaagca 299

                                                                       
Query: 186 gtttctaagaaacctactcttctggaacaaatgacatacagtggtttgtgctgctagttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtttctaagaaacctactcttctggaacaaatgacatacagtggtttgtgctgctagttt 239

                                            
Query: 246 ataggtgtttattaaagatgcagattttaatta 278
           |||||||||||||||||||||||||||||||||
Sbjct: 238 ataggtgtttattaaagatgcagattttaatta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)