Query= MSMg01no476_h07.b1 MSMg01no476_h07.b1 CHROMAT_FILE:
MSMg01no476_h07.b1 PHD_FILE: MSMg01no476_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:34 2005
(247 letters)
>mm_chr2_159476671_159477317
Length = 647
Score = 364 bits (188), Expect = e-105
Identities = 223/248 (89%), Gaps = 22/248 (8%)
Strand = Plus / Minus
Query: 1 tattaggaaagataaatgttaaaacccttgctaggaaggcctaacaacaacaccaaaaaa 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 517 tattaggaaagataaatgttaaaacccttgcaaggaaggcctaacaacaacatcaaaaaa 458
Query: 61 aaacaaaaacaaaaacaaaaacaaaaaaa--ccaagcctttgctattgtttcaagtctga 118
|| ||||||| |||||||||||||||||||||||||||||
Sbjct: 457 aa--------------------aaaaaaatgccaagcctttgctattgtttcaagtctga 418
Query: 119 cattccatgtctttctgagtttttgaaggggcgctctgatcgccacaccaggactgtgac 178
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 417 cattccatgtctttctgagtttttgaaggggtgctctgatcgccacaccaggactgtgac 358
Query: 179 tgcatctcagtggtccttcttcctggacttcttcgtgccatcctcattgatacactctag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgcatctcagtggtccttcttcctggacttcttcgtgccatcctcattgatacactctag 298
Query: 239 ccttgact 246
||||||||
Sbjct: 297 ccttgact 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_h07.g1 MSMg01no476_h07.g1 CHROMAT_FILE:
MSMg01no476_h07.g1 PHD_FILE: MSMg01no476_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:34 2005
(492 letters)
>mm_chr2_159320563_159321452
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 486/494 (98%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 1 tttgcttctgttgttgttactggaagcatcccaactctgtattccacttccatgcttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcttctgttgttgttactggaagcatcccaactctgtattccacttccatgcttccc 260
Query: 61 taaacccagagacaagctctaggtgtctgattaacctgctttctctccaccccactgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacccagagacaagctctaggtgtctgattaacctgctttctctccaccccactgcct 320
Query: 121 aaggaaaattatcattttgaaaacaaaacattagataattatgatttttagtttatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaaaattatcattttgaaaacaaaacattagataattatgatttttagtttatttct 380
Query: 181 ttgtctgtttttttttt--cctaaaagttttattttaagtgaaaaatctaaagaaggccc 238
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtctg----ttttttcccctaaaagttttattttaagtgaaaaatctaaagaaggccc 436
Query: 239 aggtgagtttaaagatgtgatgaaatttgcttgagtcctgatacttgaagtcatttcagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aggtgagtttaaagatgtgatgaaatttgcttgagtcctgatacttgaagtcatttcagg 496
Query: 299 tctactgaggtcatttggtaaggcttataaaagtcgtgacatcagtctgttttaaatcta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctactgaggtcatttggtaaggcttataaaagtcgtgacatcagtctgttttaaatcta 556
Query: 359 gcaagctactggatggtggagatgctgagaggtcaaatttgatagtggctgtgaagtcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcaagctactggatggtggagatgctgagaggtcaaatttgatagtggctgtgaagtcag 616
Query: 419 taacacacacttccatacaggcagtcatctagcattgcagcagcagaacacaggcaaagg 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taacacatacttccatacaggcagtcatctagcattgcagcagcagaacacaggcaaagg 676
Query: 479 tagcaatttacaca 492
|| |||||||||||
Sbjct: 677 taacaatttacaca 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 890
Length adjustment: 10
Effective length of query: 482
Effective length of database: 880
Effective search space: 424160
Effective search space used: 424160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
