Query= MSMg01no477_m12.b1 MSMg01no477_m12.b1 CHROMAT_FILE:
MSMg01no477_m12.b1 PHD_FILE: MSMg01no477_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:19 2005
(523 letters)
>mm_chr2_34268545_34269468
Length = 924
Score = 847 bits (438), Expect = 0.0
Identities = 502/528 (95%), Gaps = 10/528 (1%)
Strand = Plus / Plus
Query: 5 gaattcatcaacgtttccgtgc-ttcagcattcacagttaagaactgaatgatgacttta 63
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaacgtagccgtgctttcagcattcacagttaagaactgaatgatgacttta 264
Query: 64 gaacacggcctgatgaggacctggcgtttgcctctcttctcagcattgttgatgttcttt 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaacacagcctgatgaggacctggcgtttgcctctcttctcagcattgttgatgttcttt 324
Query: 124 ttttctgttgttgttggtttttcgagacagggtttctctgtatagccctgactgtcctgg 183
|||||||||||||||||||||| ||||||||||||| |||| ||| ||| |||||||||
Sbjct: 325 ttttctgttgttgttggttttttgagacagggtttccctgtgtagttctggctgtcctgg 384
Query: 184 cactcactctgtagaccaggctggcctcgaactcagtaattcgctcttcctctgcctccc 243
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 aactcactctgtagaccaggctggcctcgaactcagtaattcgc-cttcctctgcctccc 443
Query: 244 aagtgctgggattaaaggcgtgtgcctccacggccggctttgttgatgttcttaaaagca 303
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 444 gagtgctgggattaaaggcgtgtgccaccacggccggctttgttgatgtttttaaaagca 503
Query: 304 gccaccagaacattcattctcaccatgttgactccaagggaagatggcagaaagagcagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccaccagaacattcattctcaccatgttgactccaagggaagatggcagaaagagcagt 563
Query: 364 caacataattttgattgttctttgtgaattacttagtatcatgactactatgtactattg 423
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caccataattttgattgtactttgtgaattacttagtatcatgactactatgtactattg 623
Query: 424 agacaaatttcagtctttttttt--------ggagtggttaaataaattgatctgcagag 475
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 agacaaatttcagtcttttttttttttttttggagtggttaaataaattgatctgcagag 683
Query: 476 taacattagaagcttacactaaagctgggcatggtgattcatgcgttt 523
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 684 taacattagaagcttacactaaagctgggcatggtggttcatgcgttt 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m12.g1 MSMg01no477_m12.g1 CHROMAT_FILE:
MSMg01no477_m12.g1 PHD_FILE: MSMg01no477_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:19 2005
(365 letters)
>mm_chr2_34405461_34406225
Length = 765
Score = 690 bits (357), Expect = 0.0
Identities = 363/365 (99%)
Strand = Plus / Minus
Query: 1 agtgatagaaaaatggtggctgaggggtcatggctgtcatcccagttcctttctggggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgatagaaaaatggtggctgaggggtcatggctgtcatcccagttcctttctggggga 506
Query: 61 tttctttctggtttcatctataatctaggagctggctgccctgctggctttccgtttgcc 120
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcattctggtttcatctattatctaggagctggctgccctgctggctttccgtttgcc 446
Query: 121 ttgctaataacagtaaatccagcagcttccactccagttcctgtctccttcagctgactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgctaataacagtaaatccagcagcttccactccagttcctgtctccttcagctgactc 386
Query: 181 cattcagcatctcttctcagctcatgtcagatgttccctgggaagtcctgctgaaaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattcagcatctcttctcagctcatgtcagatgttccctgggaagtcctgctgaaaacaa 326
Query: 241 agtttacaacaaaagtttctcctgcttttaacccttctgcttatcagggtgctgcagcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtttacaacaaaagtttctcctgcttttaacccttctgcttatcagggtgctgcagcgg 266
Query: 301 aatgcaggtctgggcaacactcctgtgttctcactgttgttctgacaaaggtctcacagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgcaggtctgggcaacactcctgtgttctcactgttgttctgacaaaggtctcacagc 206
Query: 361 tctgg 365
|||||
Sbjct: 205 tctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
