BAC Information

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BAC

Clone NameMSMg01-478A02
Chromosome2 (Build37)
Map Location 142,894,876 - 142,895,484
singlet/doubletsinglet
Overlap geneSnrpb2
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneOtor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478A02.T7 (MSMg01no478_a02.b1)MSMg01-478A02.TJ (MSMg01no478_a02.g1)
ACCAG559223AG559224
length731734
length of high quality
(start - end)
612 (59 - 670)563 (64 - 626)
definitionCHROMAT_FILE: MSMg01no478_a02.b1 PHD_FILE: MSMg01no478_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:37 2005CHROMAT_FILE: MSMg01no478_a02.g1 PHD_FILE: MSMg01no478_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCCAGAA
CTTCCGAACTACATAGTACGACTGTGTCTCAAAAAGAAATGCAGCTGTTG
AGTTTTACGATGTGGTCTGTAGAGTTGAGGGATGGACAGTTCAGGAATAA
CTGACGACTGAGTAGTTAAGACTTAGGGTCTTAAATGGAATAAGAGATCT
TTTACAGTTACTTTTATGTTGTTTTCTGTTATGTTTATTGCTTTTCTAGC
AGGATGGAAATTGAACCATTTCTTAATCTCATACCTTTTTTGTAGGGAAC
ACCAAATGCTTTTAATACCCAAGGCACTGCAGCGCCAAATCCTCAGGTAA
TGTTTCCCTCCACAGTGCTCACCTTAAGGTCATACATTATCGCAATATAA
AATCGTATGCATGTCTCCAAAAACAAGTAATTCCATTTGCAGGACATAGT
TGCCTGTCATTTTAAGAAACTCACTCTTCAAAACATGTAAGTTTCCTTAA
GACAAGAAAACAAAACCTGGCCTGCCTGCCTGCTTGTTTCCCATGAGTTG
GTGACAATGCAGAAAGTGTGAGGGCTGAGTGGAGGTGCATGTCAGGGTTG
CAGACAGTCGGTTAGAGCACTGCTGAGCCTGTTTCCATCCCGGCTGATGC
ACTGCCCTGTCTTTCTCAGATTCACGGTGGGCAGCAGTGCTTGCAGTTAG
CCTTACTTTCTTTTTCCCAGTTCAGCCTCAN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGGTCAGGAACACAAACAGGACAGGAGGGACCTGTAG
GCAGGAGCAGATGAGGGGCTAATGGAGGAGAGCCGCTTATTGATTTGCTC
TCCCCAGTTGACTCAGTCTACTTTCTTATCCAAGACCACCAAGCCTAGGG
ATGTCACTACTCACAATGGACTGGAACCTTCCACATTGATCATCAAGTAA
GAAAACACTGTACAGGCTTGTCTGCAGCCTGATCTTATGGAGGTATTTTC
TCAATTGAGGTTCCCTCTCCCCTAACTGTTCTAGCTTGTGTCAAGCTGAT
ATAACACCATTCAGCACAAATTCCATTGGGTCAAGATGGTCTTTACCAAA
TGTATTAGCTGGTTTCTGTTGCTGTGGTAAAATACCATAACCAAGACAAC
TTATGGAGGAATTGGTTTATTTTGCCTTGTGGTTCCAGGAAGTTAGAGTG
TATGATGGTAGGAAACCATAGCACAAGCAGTAAATGCAGCTGACACAGAA
AACTGANAGCTTAACTCTGGAACCACAAGCAAGAAGCTGAAAGCAAATGA
CATGGTTGATGTCTTTCAACTCTCAAATGCCACCTCCAGTGACATATTTC
TTCCAACAAGGCCACACTTCTTAAACCTTCCCAAACAGCACCACCAACTG
GGGCCGAGGTGTTCAGACATATGATCCTACGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_a02.b1 MSMg01no478_a02.b1 CHROMAT_FILE:
MSMg01no478_a02.b1 PHD_FILE: MSMg01no478_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:37 2005
         (612 letters)



>mm_chr2_142894673_142895684
          Length = 1012

 Score = 1079 bits (558), Expect = 0.0
 Identities = 597/610 (97%), Gaps = 2/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   catagtacgactgtgtctcaaaaagaaatgcagctgttgagttttacgatgtggtctgta 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catagtacgactgggtctcaaaaagaaatgcagctgttgagttttacgatgtggtctgta 263

                                                                       
Query: 64  gagttgagggatggacagttcaggaataactgacgactgagtagttaagacttagggtct 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 gagttgagggatggacagttcaggaatgactgacgactgagtagttaagacttagggtct 323

                                                                       
Query: 124 taaatggaataagagatcttttacagttacttttatgttgttttctgttatgtttattgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaatggaataagagatcttttacagttacttttatgttgttttctgttatgtttattgc 383

                                                                       
Query: 184 ttttctagcaggatggaaattgaaccatttcttaatctcataccttttttgtagggaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttctagcaggatggaaattgaaccatttcttaatctcataccttttttgtagggaaca 443

                                                                       
Query: 244 ccaaatgcttttaatacccaaggcactgcagcgccaaatcctcaggtaatgtttccctcc 303
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaaatgcagctaatacccaaggcactgcagcgccaaatcctcaggtaatgtttccctcc 503

                                                                       
Query: 304 acagtgctcaccttaaggtcatacattatcgcaatataaaatcgtatgcatgtctccaaa 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 acagtgctcaccttaaggtcatacattattgcaatataaaatcgtatgcatgtctccaaa 563

                                                                       
Query: 364 aacaagtaattccatttgcaggacatagttgcctgtcattttaagaaactcactcttcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacaagtaattccatttgcaggacatagttgcctgtcattttaagaaactcactcttcaa 623

                                                                       
Query: 424 aacatgtaagtttccttaagacaagaaaacaaaacctggcctgcctgcctgcttgtttcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacatgtaagtttccttaagacaagaaaacaaaacctggcctgcctgcctgcttgtttcc 683

                                                                       
Query: 484 catgagttggtgacaatgcagaaagtgtgagggctgagtggaggtgcatgtcagggttgc 543
           |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 684 catgagttggtgacaaggcagaaagtgtgagggctgagcggaggtgcatgtcagggctgc 743

                                                                       
Query: 544 agacagt-cggttagagcactgctgagcctgtttccatcccggctgatgcactgccctgt 602
           ||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 744 agacagttcg-ttagagtactgctgagcctgtttccatctcggctgatgcactgccctgt 802

                     
Query: 603 ctttctcaga 612
           ||||||||||
Sbjct: 803 ctttctcaga 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)