Query= MSMg01no478_b16.b1 MSMg01no478_b16.b1 CHROMAT_FILE:
MSMg01no478_b16.b1 PHD_FILE: MSMg01no478_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:44 2005
(380 letters)
>mm_chr2_102664156_102664935
Length = 780
Score = 727 bits (376), Expect = 0.0
Identities = 379/380 (99%)
Strand = Plus / Minus
Query: 1 cccatcactgttccttgccacagaaataacatttgtaagctttagcttagtcacactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cccatcactgttccttgccacagaaataacatttgtaagctttagcttagtcacactgaa 521
Query: 61 ctttcttgggaggcgaggagagattatatctttcgcctaatactttataaccctccacat 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 520 ctttcttgggaggcgaggagagattatatctttcgcctaatattttataaccctccacat 461
Query: 121 cttgaatctatttataatttctagtaaggcagccgctggagggtagcccggcaccatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cttgaatctatttataatttctagtaaggcagccgctggagggtagcccggcaccatgct 401
Query: 181 gtggaaggaactcctgagtatattttccaaacatgggctgaaagagcttgttgcttctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtggaaggaactcctgagtatattttccaaacatgggctgaaagagcttgttgcttctcc 341
Query: 241 ccttaggacactcaagtgcgaaccaggacagtggagtgaccacaacttctggtcctatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccttaggacactcaagtgcgaaccaggacagtggagtgaccacaacttctggtcctatga 281
Query: 301 ggagacctcagattccaggtgagttttccatcatgaagcaaacatcagataattacagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggagacctcagattccaggtgagttttccatcatgaagcaaacatcagataattacagca 221
Query: 361 agattctctgaatatcctag 380
||||||||||||||||||||
Sbjct: 220 agattctctgaatatcctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_b16.g1 MSMg01no478_b16.g1 CHROMAT_FILE:
MSMg01no478_b16.g1 PHD_FILE: MSMg01no478_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:44 2005
(653 letters)
>mm_chr2_102508324_102509376
Length = 1053
Score = 1180 bits (610), Expect = 0.0
Identities = 643/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Plus
Query: 1 aagtcatccattagccaacattttttaaaccattgcggagtcataaaactgagctaacca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aagtcatccattagccaacattttttaaaccattgtggagtcataaaactgagctaacca 260
Query: 61 tcgattttaagatcatgaccataataagcatttcagatgaggccgggtgtgttcagggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgattttaagatcatgaccataataagcatttcagatgaggccgggtgtgttcagggtg 320
Query: 121 ttatgctcatagatcaaatgcaaacatttcaaatagaggactgatcactgctggagttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgctcatagatcaaatgcaaacatttcaaatagaggactgatcactgctggagttta 380
Query: 181 cctgaactaaaccataagtttggatttttccccatagtccatgacgtgtttggttaagaa 240
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 381 cctgaactaaaccataagtttggatttttccccacaggccatgacgtgtttggttaagaa 440
Query: 241 ttttggtgctggtggggtgcagggagtttattctgagctggaggcagacttgtgtgaggc 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggtgctggtggggtgcggggagtttattctgagctggaggcagacttgtgtgaggc 500
Query: 301 ttattggaagtctgtggggttgaagtaaaggaagcttgaatggacagagggagtggggaa 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ttattggaagtctgtggggttgaagtaaaggaagcgtgaatggacagagggagtggggaa 560
Query: 361 actcagccaagacctcaacccacctcaggatgagctggggtgaggaaggcacttccaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcagccaagacctcaacccacctcaggatgagctggggtgaggaaggcacttccaggt 620
Query: 421 gccccctgactgaggaaagataaacctttgtgttttctattcctgcattaaccagccatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccccctgactgaggaaagataaacctttgtgttttctattcctgcattaaccagccatt 680
Query: 481 catctgagacagggacacagctctagatggataaaatgcaacgtttcagaagaagacata 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catctgagacagggacacagttctagatggataaaatgcaacgtttcagaagaagacata 740
Query: 541 tccaagagccgttagtttggttctcctaacatggaagctagtgaatccttcttttctgaa 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaagagctgttagtttggttctcctaacatggaagctagtgaatccttcttttctgaa 800
Query: 601 gttgaaggcctgggcatctggataatgagc-tacagtggtcattttcttcctca 653
|||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 801 gttgaaggcctgggcatctggataatgagcct-cagtggccattttcttcctca 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
