Query= MSMg01no478_d09.b1 MSMg01no478_d09.b1 CHROMAT_FILE:
MSMg01no478_d09.b1 PHD_FILE: MSMg01no478_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:53 2005
(664 letters)
>mm_chr2_84118953_84120016
Length = 1064
Score = 1201 bits (621), Expect = 0.0
Identities = 647/663 (97%), Gaps = 12/663 (1%)
Strand = Plus / Plus
Query: 1 tttgagaatctcatacatgcatatccattctctcccaactccatgtgttcttccaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagaatctcatacatgcatatccattctctcccaactccatgtgttcttccaagaat 260
Query: 61 caaaatgcctttgaagttcttatccttccaaaaagccatgtggtgtatttcacacatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaatgcctttgaagttcttatccttccaaaaagccatgtggtgtatttcacacatgct 320
Query: 121 ctaaagcaccattctgagtaaacacctcatcttggtgaaatgtcttaatactccacaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaagcaccattctgagtaaacacctcatcttggtgaaatgtcttaatactccacaatt 380
Query: 181 agttgtattctctaccttttcacaatttacataccacttgaatttggctttatttgccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgtattctctaccttttcacaatttacataccacttgaatttggctttatttgccac 440
Query: 241 tttttttttaaaaccaaatttcaactgtttaaagtgccttccttttttccattttacccg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaaattaaaaccaaatttcaactgtttaaagtgccttccttttttccattttacccg 500
Query: 301 atttgagctcttaggatacattatacttagcttggggtgtttagaagtccttaatatcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgagctcttaggatacattatacttagcttggggtgtttagaagtccttaatatcat 560
Query: 361 gactcctttgaaaatctattcactcttaacatcatctttctaagtgagggaggacaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactcctttgaaaatctattcactcttaacatcatctttctaagtgagggaggacaaaaa 620
Query: 421 acaatagtgaacctgaaataatgatctatgtagataatttctgaatgagggaatttgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatagtgaacctgaaataatgatctatgtagataatttctgaatgagggaatttgagt 680
Query: 481 gaataacagaaaatgtgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataacagaaaatgtgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 740
Query: 541 gaaagaaagaaagaaagaaagaaagaaagagggaaagaatatagagatgaattcaagatt 600
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 gaaagaaagaaagaaaga------------gggaaagaatatagagatgaattcaagatt 788
Query: 601 atatattccaaagcaatagcccaaacatacaagcactggtaggactagaacattttctat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atatattccaaagcaatagcccaaacatacaagcactggtaggactagaacattttctat 848
Query: 661 cct 663
|||
Sbjct: 849 cct 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d09.g1 MSMg01no478_d09.g1 CHROMAT_FILE:
MSMg01no478_d09.g1 PHD_FILE: MSMg01no478_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:53 2005
(666 letters)
>mm_chr2_84205160_84206226
Length = 1067
Score = 1243 bits (643), Expect = 0.0
Identities = 661/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Minus
Query: 1 tttactgaagctgtaattaattacagtggacatggtgtaaaaatttaaaagcatttgaga 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 867 tttactgaagctgtaattaattacagtggccatggtgtaaaaatttaaaagcatttgaga 808
Query: 61 gataataatctctttaaattaaaaaccattccagctgagacacttcagattaaactgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gataataatctctttaaattaaaaaccattccagctgagacacttcagattaaactgtct 748
Query: 121 ctattttttaatgtaataagccaaaacatccaagggcattaattttctgaaggcgataaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 747 ctattttttaatgtaataagccaaaacatccaagggcattaagtttctgaaggcgataaa 688
Query: 181 gttaatagcaattacattgcattccaaaaccagtagtaagaaagaaaacaatggtctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gttaatagcaattacattgcattccaaaaccagtagtaagaaagaaaacaatggtctcct 628
Query: 241 ggaattctaggccatatgccctcatgcaattttgatttagcaaagatgtcagtaaagtac 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggaattctaggccatatgccttcatgcaattttgatttagcaaagatgtcagtaaagtac 568
Query: 301 ccaccaagtgaaaagcaaaattaatactacttcctcatgtgaaaaaaaa-gtcccagagt 359
||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 567 ccaacaagtgaaaagcaaaattaatactacttccgcatgtgaaaaaaaaagtcccagagt 508
Query: 360 taataaaataaatgctcactgggcttatgaggcaagtggggccgccaaggcaaacaatac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taataaaataaatgctcactgggcttatgaggcaagtggggccgccaaggcaaacaatac 448
Query: 420 tgaagccaaactggaccaggaaaagtatagtatcagtctaaatctctaatcagacggctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgaagccaaactggaccaggaaaagtatagtatcagtctaaatctctaatcagacggctc 388
Query: 480 attcattcagttctcaatggagaaacactgtcataataaatggcttatcaaggagattgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attcattcagttctcaatggagaaacactgtcataataaatggcttatcaaggagattgg 328
Query: 540 aaaattaagggaaacaatagctatgttgatcaaatcataacagtacaaagaatgttgtta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaattaagggaaacaatagctatgttgatcaaatcataacagtacaaagaatgttgtta 268
Query: 600 taaggggttagggtatacagtgataggagcttaacatcttaagtacaaataattataatt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaggggttagggtatacagtgataggagcttaacatcttaagtacaaataattataatt 208
Query: 660 aggaata 666
|||||||
Sbjct: 207 aggaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
