XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAC
TTTGCTCTTGATCATAGCTATTGTTACTTTTGTGTATTATTATTTTTAAA
ATGTTAATAGATCATGCAAAAAAAGAATCTTTCTTAAAATTGCTCACTCC
AGGAAGACATAGTTTACTATATACTAATATAGAGAATTATATTAGCCTTT
CTAATTAATGGTGCTTTGCTTTCTGTCCATAAAGAGATGGGTAATTTTGT
CCTGCATGTGCTCTTTTACCATGAGGTTCTGTCTTTCTAGAGATGATTCT
AAGAACTACTTAGGAAAAAAAATTCTGGAACCAGGAGCTATAAAATGTAC
TTGGCCATGTGTGTTGTCAGAGCAGTCATGATAGTAACTTGCATAGCAAA
AATTTCAAATTATTCAGATATTTTGAAAAATATTTTAGCAGTTTTCAATA
AAGGTAAATGAAAACTTATGTTACATAATCATTTTACTTGTAGGTAATTT
AAATGAGTTATTAAGATATATAGGTATCCTTTAAAGTCATTTAAGTCAGT
TTCTACAGTACTTTTTGCAATAGTAGAATCCATTTGATGAGTAGATAGAA
TAGAATATTTGTGAAACAAAATCATAGATATGAAAGGAGTAATTTTCAAG
AACACATTAGGTAAAAGGATGCACACACAAACAGATGTCAAATTTTATGA
TTCCCATAAACAGCAGAAGAGGCAAATATATAGAAAT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGCTGAAGAATACTGAAGGACTGAGAAGTACCT
GAAAAAATATTCAACATCTTTAATCATCAGGGAAATGCAAATCAAAGCAA
CCTTGAGATCCCACCTCACACCACTCAGAATGGCTCGAAATTCAGGTGAC
AGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCTTCCCTTTGAT
GGTGGGATTGCATGTTTGTACAACCACTCTGAAAGTCAGTCTGGCTGTTC
CTCAGAAAATTAGATATAGCACTACGGGTAGATCCAGCAATATCTCTCCT
GGGCATATGCCTAGAAGATGTTCCAACTTGTAATAAGGACACATGCTCCA
CTATGTTCATAGCGGCCTTAATTATAATAGCCAGGAGCTAGAAAGAACCC
AAATGTTCCTCAATGAAGTAGCTAGAGAATGGACCAAAGGAGTTGAATGG
GTTTGCACAGGAGGAACAACAATATGAACTAACCAGTACCCCAAGTGCTC
CCTGGAACTAAACCACTAACCAAAGAGTACACATGGTGGGATTCATGACT
CCAGCTGCATATGTAACAGAGAATGACCCAGTCATTCATCAACGGGAGAA
GAGGCTTTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAGGTGAATGCCA
GGGAGTGGGTGCATGAGTGATCAGGGGGAGTGAG

Query= MSMg01no478_l01.b1 MSMg01no478_l01.b1 CHROMAT_FILE:
MSMg01no478_l01.b1 PHD_FILE: MSMg01no478_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:28 2005
         (665 letters)



>mm_chr2_82877795_82878860
          Length = 1066

 Score = 1241 bits (642), Expect = 0.0
 Identities = 660/666 (99%), Gaps = 1/666 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatagctattgttacttttgtgtattattatttttaaaatgttaatagatcatgcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 866 tcatagctattgttacttttgtgtattattatttttaaaatgttactagatcatgcaaaa 807

                                                                       
Query: 61  aaagaatctttcttaaaattgctcactccaggaagacatagtttactatatactaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aaagaatctttcttaaaattgctcactccaggaagacatagtttactatatactaatata 747

                                                                       
Query: 121 gagaattatattagcctttctaattaatggtgctttgctttctgtccataaagagatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gagaattatattagcctttctaattaatggtgctttgctttctgtccataaagagatggg 687

                                                                       
Query: 181 taattttgtcctgcatgtgctcttttaccatgaggttctgtctttctagagatgattcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taattttgtcctgcatgtgctcttttaccatgaggttctgtctttctagagatgattcta 627

                                                                       
Query: 241 agaactacttaggaaaaaaaattctggaaccaggagctataaaatgtacttggccatgtg 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agaactacaaaggaaaaaaaattctggaaccaggagctataaaatgtacttggccatgtg 567

                                                                       
Query: 301 tgttgtcagagcagtcatgatagtaacttgcatagcaaaaatttcaaattattcagatat 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 566 tgttgtcagagcagtcatgatagtaacttgcacagcaaaaatttcaaattattcagatat 507

                                                                       
Query: 361 tttgaaaaatattttagcagttttcaataaaggtaaatgaaaacttatgttacataatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttgaaaaatattttagcagttttcaataaaggtaaatgaaaacttatgttacataatca 447

                                                                       
Query: 421 ttttacttgtaggtaatttaaatgagttattaagatatataggtatcctttaaagtcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttacttgtaggtaatttaaatgagttattaagatatataggtatcctttaaagtcatt 387

                                                                       
Query: 481 taagtcagtttctacagtactttttgcaatagtagaatccatttgatgagtagatagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taagtcagtttctacagtactttttgcaatagtagaatccatttgatgagtagatagaat 327

                                                                       
Query: 541 agaatatttgtgaaac-aaaatcatagatatgaaaggagtaattttcaagaacacattag 599
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaatatttgtgaaacaaaaatcatagatatgaaaggagtaattttcaagaacacattag 267

                                                                       
Query: 600 gtaaaaggatgcacacacaaacagatgtcaaattttatgattcccataaacagcagaaga 659
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtaaaagaatgcacacacaaacagatgtcaaattttatgattcccataaacagcagaaga 207

                 
Query: 660 ggcaaa 665
           ||||||
Sbjct: 206 ggcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space:   691680
Effective search space used:   691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)