BAC Information

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BAC

Clone NameMSMg01-479A12
Chromosome2 (Build37)
Map Location 161,450,310 - 161,450,540
singlet/doubletsinglet
Overlap genePtprt
Upstream geneTop1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479A12.T7 (MSMg01no479_a12.b1)MSMg01-479A12.TJ (MSMg01no479_a12.g1)
ACCAG560007AG560008
length762747
length of high quality
(start - end)
244 (70 - 313)237 (78 - 314)
definitionCHROMAT_FILE: MSMg01no479_a12.b1 PHD_FILE: MSMg01no479_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:52 2005CHROMAT_FILE: MSMg01no479_a12.g1 PHD_FILE: MSMg01no479_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCG
GAATTCTCTCTTCAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAACTGGACATATTTTTATCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATACTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGATACTCAAG
ATGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAAATTTGGGAA
CAAACACCCATG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACAAAAAACAATCCTAAACAGTTCTTTCTCCTCTATC
AAAGTTACATTGTCTATGTAGCTAACCGTACCCACAAACGCTTCCTAAGT
ATCCAGGGTACAGTTTGAAATGGACAAGGAAATCTTCTACCTTGTTATAA
ATTTACATTTTCTCTCCCGGGCAAGGTTAGTCATTTCATTTTCTCTCTTT
CTTCCCATCAATAAAAGACAAAGTCACCTGTCAAACTGGAGATTGTAAAA
CCTGTCAAAATTGAATTTTTCNAGTTTAGCTAAATATTACTCTGCAACTA
TTTTGCATGTCTTTGTCTTATTACAATTTTGATGAATGAGAGAGAAAATA
AGCCTGTTTCTTTACACGAAAACATTACTTAGAAGTTTATTGTTTCCTCC
CTCCTATCAGTGTGAGAGTTTTGGAAGTTAGAGATAAAACACACACACAA
ACACACACACTCACACACACACATATACTCACTGTTGATCTGAGTTTTCA
GTGTGTACACAGTAACTTTAGGACCAATGAGAAACTTCAGATAATGTCTA
GCCTAAGCTGACATCACACTGACCTGAGAGATGGATGCCGAATCTGGGTG
GTTTTTTACCCTCTACAAGCATACTTTTTGGCAAATGGGGCTTGCTCTCT
CCTTCACACTTTTCTAGGACAAAAAAAAAAACAAACCTGATTCTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_a12.g1 MSMg01no479_a12.g1 CHROMAT_FILE:
MSMg01no479_a12.g1 PHD_FILE: MSMg01no479_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:53 2005
         (237 letters)



>mm_chr2_161450104_161450740
          Length = 637

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gttctttctcctctatcaaagttacattgtctatgtagctaaccgtacccacaaacgctt 66
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 437 gttctttctcctctatcaaagttacattgtctatgtagcaaaccgtacccacaaacgctt 378

                                                                       
Query: 67  cctaagtatccagggtacagtttgaaatggacaaggaaatcttctaccttgttataaatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cctaagtatccagggtacagtttgaaatggacaaggaaatcttctaccttgttataaatt 318

                                                                       
Query: 127 tacattttctctcccgggcaaggttagtcatttcattttctctctttcttcccatcaata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tacattttctctcccgggcaaggttagtcatttcattttctctctttcttcccatcaata 258

                                                              
Query: 187 aaagacaaagtcacctgtcaaactggagattgtaaaacctgtcaaaattga 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaagacaaagtcacctgtcaaactggagattgtaaaacctgtcaaaattga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)